Human Gene PEX26 (uc002znt.3)
  Description: Homo sapiens peroxisomal biogenesis factor 26 (PEX26), transcript variant 3, mRNA.
RefSeq Summary (NM_001199319): This gene belongs to the peroxin-26 gene family. It is probably required for protein import into peroxisomes. It anchors PEX1 and PEX6 to peroxisome membranes, possibly to form heteromeric AAA ATPase complexes required for the import of proteins into peroxisomes. Defects in this gene are the cause of peroxisome biogenesis disorder complementation group 8 (PBD-CG8). PBD refers to a group of peroxisomal disorders arising from a failure of protein import into the peroxisomal membrane or matrix. The PBD group is comprised of four disorders: Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). Alternatively spliced transcript variants have been identified for this gene. [provided by RefSeq, Dec 2010]. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
Transcript (Including UTRs)
   Position: hg19 chr22:18,560,686-18,573,797 Size: 13,112 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr22:18,561,143-18,570,841 Size: 9,699 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:18,560,686-18,573,797)mRNA (may differ from genome)Protein (256 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCLynxMalacardsMGIOMIM
PubMedTreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: F6UBB5_HUMAN
DESCRIPTION: SubName: Full=Peroxisome assembly protein 26;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): PEX26
CDC HuGE Published Literature: PEX26

-  MalaCards Disease Associations
  MalaCards Gene Search: PEX26
Diseases sorted by gene-association score: peroxisome biogenesis disorder 7b* (1230), peroxisome biogenesis disorder 7a* (1230), neonatal adrenoleukodystrophy* (169), peroxisome biogenesis disorders, zellweger syndrome spectrum* (141), peroxisome biogenesis disorder 1b* (139), zellweger syndrome (13), rhizomelic chondrodysplasia punctata (12), adrenoleukodystrophy (10), refsum disease (10), chromosome 17q12 deletion syndrome (6)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.48 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 126.88 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -101.50209-0.486 Picture PostScript Text
3' UTR -1247.372956-0.422 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR010797 - Pex26

Pfam Domains:
PF07163 - Pex26 protein

ModBase Predicted Comparative 3D Structure on F6UBB5
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK000065 - Homo sapiens cDNA FLJ20058 fis, clone COL01338.
AK000702 - Homo sapiens cDNA FLJ20695 fis, clone KAIA2502.
LF384186 - JP 2014500723-A/191689: Polycomb-Associated Non-Coding RNAs.
BC016280 - Homo sapiens peroxisomal biogenesis factor 26, mRNA (cDNA clone MGC:8846 IMAGE:3910351), complete cds.
BC047320 - Homo sapiens peroxisomal biogenesis factor 26, mRNA (cDNA clone MGC:54167 IMAGE:5247852), complete cds.
AB089678 - Homo sapiens mRNA for Pex26p, complete cds.
JD141619 - Sequence 122643 from Patent EP1572962.
LF365643 - JP 2014500723-A/173146: Polycomb-Associated Non-Coding RNAs.
CR456362 - Homo sapiens Em:AC008101.3 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.Em:AC008101.3).
AB242826 - Homo sapiens PEX26intG231T mRNA for Pex26pintG231T, complete cds.
AB528206 - Synthetic construct DNA, clone: pF1KB0906, Homo sapiens PEX26 gene for Peroxin-26, without stop codon, in Flexi system.
KU178709 - Homo sapiens peroxisomal biogenesis factor 26 isoform 1 (PEX26) mRNA, partial cds.
KU178710 - Homo sapiens peroxisomal biogenesis factor 26 isoform 2 (PEX26) mRNA, partial cds, alternatively spliced.
KJ906238 - Synthetic construct Homo sapiens clone ccsbBroadEn_15908 PEX26 gene, encodes complete protein.
KJ899170 - Synthetic construct Homo sapiens clone ccsbBroadEn_08564 PEX26 gene, encodes complete protein.
AB103104 - Homo sapiens PEX26T35insC mRNA for Pex26pT35insC, complete cds.
AB103105 - Homo sapiens PEX26T35insC/del223-271 mRNA for Pex26pT35insC/del223-271, complete cds.
AB103106 - Homo sapiens PEX26G89R mRNA for Pex26pG89R, complete cds.
AB103107 - Homo sapiens PEX26R98W mRNA for Pex26pR98W, complete cds.
AB103109 - Homo sapiens PEX26L45P mRNA for Pex26pL45P, complete cds.
AB103110 - Homo sapiens PEX26G255insT mRNA for Pex26pG255insT, complete cds.
AB242828 - Homo sapiens PEX26C350T mRNA for Pex26pP117L, complete cds.
AB242829 - Homo sapiens PEX26C292T mRNA for Pex26pR98W, complete cds.
AB242830 - Homo sapiens PEX26T131C mRNA for Pex26pL44P, complete cds.
CU013361 - Homo sapiens PEX26, mRNA (cDNA clone IMAGE:100000235), complete cds, without stop codon, in Gateway system.
CU013073 - Homo sapiens PEX26, mRNA (cDNA clone IMAGE:100000331), complete cds, with stop codon, in Gateway system.
AB242827 - Homo sapiens PEX26C457G+C861del mRNA for Pex26pL153V/fs/Ter, complete cds.
AB103108 - Homo sapiens PEX26M1T mRNA for Pex26pM1T, partial cds.
LF365644 - JP 2014500723-A/173147: Polycomb-Associated Non-Coding RNAs.
LF365645 - JP 2014500723-A/173148: Polycomb-Associated Non-Coding RNAs.
LF365649 - JP 2014500723-A/173152: Polycomb-Associated Non-Coding RNAs.
JD461523 - Sequence 442547 from Patent EP1572962.
JD141800 - Sequence 122824 from Patent EP1572962.
JD081144 - Sequence 62168 from Patent EP1572962.
JD431932 - Sequence 412956 from Patent EP1572962.
JD360880 - Sequence 341904 from Patent EP1572962.
JD068566 - Sequence 49590 from Patent EP1572962.
JD470359 - Sequence 451383 from Patent EP1572962.
JD373656 - Sequence 354680 from Patent EP1572962.
JD451027 - Sequence 432051 from Patent EP1572962.
JD125231 - Sequence 106255 from Patent EP1572962.
JD446075 - Sequence 427099 from Patent EP1572962.
JD294532 - Sequence 275556 from Patent EP1572962.
JD219101 - Sequence 200125 from Patent EP1572962.
JD328246 - Sequence 309270 from Patent EP1572962.
JD425572 - Sequence 406596 from Patent EP1572962.
LF365650 - JP 2014500723-A/173153: Polycomb-Associated Non-Coding RNAs.
JD560457 - Sequence 541481 from Patent EP1572962.
JD475329 - Sequence 456353 from Patent EP1572962.
JD374447 - Sequence 355471 from Patent EP1572962.
JD351748 - Sequence 332772 from Patent EP1572962.
JD556567 - Sequence 537591 from Patent EP1572962.
JD127310 - Sequence 108334 from Patent EP1572962.
JD459529 - Sequence 440553 from Patent EP1572962.
JD145770 - Sequence 126794 from Patent EP1572962.
JD541695 - Sequence 522719 from Patent EP1572962.
JD516495 - Sequence 497519 from Patent EP1572962.
JD172318 - Sequence 153342 from Patent EP1572962.
JD315241 - Sequence 296265 from Patent EP1572962.
JD165109 - Sequence 146133 from Patent EP1572962.
JD498768 - Sequence 479792 from Patent EP1572962.
JD540364 - Sequence 521388 from Patent EP1572962.
JD107711 - Sequence 88735 from Patent EP1572962.
JD341550 - Sequence 322574 from Patent EP1572962.
JD560526 - Sequence 541550 from Patent EP1572962.
MA619763 - JP 2018138019-A/191689: Polycomb-Associated Non-Coding RNAs.
MA601220 - JP 2018138019-A/173146: Polycomb-Associated Non-Coding RNAs.
MA601221 - JP 2018138019-A/173147: Polycomb-Associated Non-Coding RNAs.
MA601222 - JP 2018138019-A/173148: Polycomb-Associated Non-Coding RNAs.
MA601226 - JP 2018138019-A/173152: Polycomb-Associated Non-Coding RNAs.
MA601227 - JP 2018138019-A/173153: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04146 - Peroxisome

-  Other Names for This Gene
  Alternate Gene Symbols: F6UBB5, F6UBB5_HUMAN, NM_001199319, NP_001186248
UCSC ID: uc002znt.3
RefSeq Accession: NM_001199319
Protein: F6UBB5 CCDS: CCDS56221.1

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene PEX26:
pbd (Zellweger Spectrum Disorder)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001199319.1
exon count: 5CDS single in 3' UTR: no RNA size: 3946
ORF size: 771CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1628.00frame shift in genome: no % Coverage: 99.75
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.