Human Gene TANGO2 (uc002zrf.2)
  Description: Homo sapiens transport and golgi organization 2 homolog (Drosophila) (TANGO2), mRNA.
RefSeq Summary (NM_152906): This gene belongs to the transport and Golgi organization family, whose members are predicted to play roles in secretory protein loading in the endoplasmic reticulum. Depletion of this gene in Drosophila S2 cells causes fusion of the Golgi with the ER. In mouse tissue culture cells, this protein co-localizes with a mitochondrially targeted mCherry protein and displays very low levels of co-localization with Golgi and peroxisomes. Allelic variants of this gene are associated with rhabdomyolysis, metabolic crises with encephalopathy, and cardiac arrhythmia. [provided by RefSeq, Apr 2016]. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments.
Transcript (Including UTRs)
   Position: hg19 chr22:20,008,633-20,053,447 Size: 44,815 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr22:20,024,322-20,052,185 Size: 27,864 Coding Exon Count: 6 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA Descriptions
Other NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:20,008,633-20,053,447)mRNA (may differ from genome)Protein (214 aa)
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H-INVHGNCLynxMalacardsMGIPubMed
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-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TANGO2
Diseases sorted by gene-association score: metabolic encephalomyopathic crises, recurrent, with rhabdomyolysis, cardiac arrhythmias, and neurodegeneration* (1231), cardiac conduction disease with or without dilated cardiomyopathy* (283), visual epilepsy* (97), seizure disorder* (94)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.72 RPKM in Whole Blood
Total median expression: 461.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -26.5064-0.414 Picture PostScript Text
3' UTR -488.521262-0.387 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF05742 - Transport and Golgi organisation 2

ModBase Predicted Comparative 3D Structure on Q6ICL3-2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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-  Descriptions from all associated GenBank mRNAs
  CR627452 - Homo sapiens mRNA; cDNA DKFZp686O2142 (from clone DKFZp686O2142).
AK289862 - Homo sapiens cDNA FLJ76702 complete cds.
AK316056 - Homo sapiens cDNA, FLJ78955 complete cds, highly similar to Ser/Thr-rich protein T10 in DGCR region.
BC041339 - Homo sapiens chromosome 22 open reading frame 25, mRNA (cDNA clone MGC:41927 IMAGE:5284126), complete cds.
AK311676 - Homo sapiens cDNA, FLJ18718.
AK301366 - Homo sapiens cDNA FLJ51964 complete cds, highly similar to Ser/Thr-rich protein T10 in DGCR region.
AK301054 - Homo sapiens cDNA FLJ50702 complete cds, moderately similar to Ser/Thr-rich protein T10 in DGCR region.
AK297922 - Homo sapiens cDNA FLJ50590 complete cds, highly similar to Ser/Thr-rich protein T10 in DGCR region.
AK298593 - Homo sapiens cDNA FLJ51954 complete cds, highly similar to Ser/Thr-rich protein T10 in DGCR region.
AK316020 - Homo sapiens cDNA, FLJ78919 complete cds, highly similar to Ser/Thr-rich protein T10 in DGCR region.
AK297075 - Homo sapiens cDNA FLJ50572 complete cds, moderately similar to Ser/Thr-rich protein T10 in DGCR region.
AK092484 - Homo sapiens cDNA FLJ35165 fis, clone PLACE6012028, highly similar to SER/THR-RICH PROTEIN T10 IN DGCR REGION.
AX747566 - Sequence 1091 from Patent EP1308459.
CR456355 - Homo sapiens Em:AC006547.3 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.Em:AC006547.3.V2).
JD186311 - Sequence 167335 from Patent EP1572962.
CU013353 - Homo sapiens C22orf25, mRNA (cDNA clone IMAGE:100000228), complete cds, without stop codon, in Gateway system.
CU013065 - Homo sapiens C22orf25, mRNA (cDNA clone IMAGE:100000324), complete cds, with stop codon, in Gateway system.
AB528088 - Synthetic construct DNA, clone: pF1KE0521, Homo sapiens C22orf25 gene for chromosome 22 open reading frame 25, without stop codon, in Flexi system.
CU691988 - Synthetic construct Homo sapiens gateway clone IMAGE:100020858 5' read C22orf25 mRNA.
KJ900124 - Synthetic construct Homo sapiens clone ccsbBroadEn_09518 C22orf25 gene, encodes complete protein.
AK295210 - Homo sapiens cDNA FLJ50519 complete cds, highly similar to Ser/Thr-rich protein T10 in DGCR region.
AK057461 - Homo sapiens cDNA FLJ32899 fis, clone TESTI2005408, highly similar to SER/THR-RICH PROTEIN T10 IN DGCR REGION.
AK309398 - Homo sapiens cDNA, FLJ99439.
JD024330 - Sequence 5354 from Patent EP1572962.
AL713640 - Homo sapiens mRNA; cDNA DKFZp761P1121 (from clone DKFZp761P1121).
JD445896 - Sequence 426920 from Patent EP1572962.
JD232090 - Sequence 213114 from Patent EP1572962.
JD239747 - Sequence 220771 from Patent EP1572962.
JD375639 - Sequence 356663 from Patent EP1572962.
JD496011 - Sequence 477035 from Patent EP1572962.
JD532891 - Sequence 513915 from Patent EP1572962.
JD509394 - Sequence 490418 from Patent EP1572962.
JD098506 - Sequence 79530 from Patent EP1572962.
JD452461 - Sequence 433485 from Patent EP1572962.
JD058611 - Sequence 39635 from Patent EP1572962.
JD050265 - Sequence 31289 from Patent EP1572962.
JD151057 - Sequence 132081 from Patent EP1572962.
JD196586 - Sequence 177610 from Patent EP1572962.
JD450701 - Sequence 431725 from Patent EP1572962.
JD067464 - Sequence 48488 from Patent EP1572962.
JD378518 - Sequence 359542 from Patent EP1572962.
JD051095 - Sequence 32119 from Patent EP1572962.
JD099056 - Sequence 80080 from Patent EP1572962.
JD196914 - Sequence 177938 from Patent EP1572962.
JD281774 - Sequence 262798 from Patent EP1572962.
JD097168 - Sequence 78192 from Patent EP1572962.
JD318549 - Sequence 299573 from Patent EP1572962.
JD039396 - Sequence 20420 from Patent EP1572962.
JC506797 - Sequence 165 from Patent EP2733220.
JC737909 - Sequence 165 from Patent WO2014075939.
JD525991 - Sequence 507015 from Patent EP1572962.
JD363946 - Sequence 344970 from Patent EP1572962.
JD539560 - Sequence 520584 from Patent EP1572962.
JD146388 - Sequence 127412 from Patent EP1572962.
JD361240 - Sequence 342264 from Patent EP1572962.
JD373637 - Sequence 354661 from Patent EP1572962.
JD070604 - Sequence 51628 from Patent EP1572962.
JD398837 - Sequence 379861 from Patent EP1572962.
JD150922 - Sequence 131946 from Patent EP1572962.
JD150925 - Sequence 131949 from Patent EP1572962.
JD515280 - Sequence 496304 from Patent EP1572962.
JD435476 - Sequence 416500 from Patent EP1572962.
JD057310 - Sequence 38334 from Patent EP1572962.
JD109028 - Sequence 90052 from Patent EP1572962.
JD386170 - Sequence 367194 from Patent EP1572962.
JD352415 - Sequence 333439 from Patent EP1572962.
JD524627 - Sequence 505651 from Patent EP1572962.
JD190314 - Sequence 171338 from Patent EP1572962.
JD400085 - Sequence 381109 from Patent EP1572962.
DQ598727 - Homo sapiens piRNA piR-36793, complete sequence.
MP014839 - Sequence 42 from Patent WO2019016252.

-  Other Names for This Gene
  Alternate Gene Symbols: AX747566, C22orf25, Q6ICL3-2
UCSC ID: uc002zrf.2
RefSeq Accession: NM_152906
Protein: Q6ICL3-2, splice isoform of Q6ICL3 CCDS: CCDS63404.1

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene TANGO2:
tango2-mea (TANGO2 Deficiency)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AX747566.1
exon count: 7CDS single in 3' UTR: no RNA size: 1988
ORF size: 645CDS single in intron: no Alignment % ID: 99.70
txCdsPredict score: 1369.00frame shift in genome: no % Coverage: 98.94
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.