Human Gene ACY1 (uc003dcq.3)
  Description: Homo sapiens aminoacylase 1 (ACY1), transcript variant 2, mRNA.
RefSeq Summary (NM_001198895): This gene encodes a cytosolic, homodimeric, zinc-binding enzyme that catalyzes the hydrolysis of acylated L-amino acids to L-amino acids and an acyl group, and has been postulated to function in the catabolism and salvage of acylated amino acids. This gene is located on chromosome 3p21.1, a region reduced to homozygosity in small-cell lung cancer (SCLC), and its expression has been reported to be reduced or undetectable in SCLC cell lines and tumors. The amino acid sequence of human aminoacylase-1 is highly homologous to the porcine counterpart, and this enzyme is the first member of a new family of zinc-binding enzymes. Mutations in this gene cause aminoacylase-1 deficiency, a metabolic disorder characterized by central nervous system defects and increased urinary excretion of N-acetylated amino acids. Alternative splicing of this gene results in multiple transcript variants. Read-through transcription also exists between this gene and the upstream ABHD14A (abhydrolase domain containing 14A) gene, as represented in GeneID:100526760. A related pseudogene has been identified on chromosome 18. [provided by RefSeq, Nov 2010].
Transcript (Including UTRs)
   Position: hg19 chr3:52,017,300-52,023,218 Size: 5,919 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg19 chr3:52,018,081-52,023,091 Size: 5,011 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:52,017,300-52,023,218)mRNA (may differ from genome)Protein (408 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACY1_HUMAN
DESCRIPTION: RecName: Full=Aminoacylase-1; Short=ACY-1; EC=3.5.1.14; AltName: Full=N-acyl-L-amino-acid amidohydrolase;
FUNCTION: Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate).
CATALYTIC ACTIVITY: An N-acyl-L-amino acid + H(2)O = a carboxylate + an L-amino acid.
COFACTOR: Binds 2 zinc ions per subunit.
SUBUNIT: Homodimer. Interacts with SPHK1 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Expression is highest in kidney, strong in brain and weaker in placenta and spleen.
DISEASE: Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D) [MIM:609924]. ACY1D results in a metabolic disorder manifesting with encephalopathy, unspecific psychomotor delay, psychomotor delay with atrophy of the vermis and syringomyelia, marked muscular hypotonia or normal clinical features. Epileptic seizures are a frequent feature. All affected individuals exhibit markedly increased urinary excretion of several N-acetylated amino acids.
SIMILARITY: Belongs to the peptidase M20A family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ACY1
Diseases sorted by gene-association score: aminoacylase 1 deficiency* (1701), syringomyelia (23), greig cephalopolysyndactyly syndrome (17), renal cell carcinoma (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.48 RPKM in Kidney - Cortex
Total median expression: 77.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -168.10319-0.527 Picture PostScript Text
3' UTR -28.14127-0.222 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001261 - ArgE/DapE_CS
IPR010159 - N-acyl_aa_amidohydrolase
IPR002933 - Peptidase_M20
IPR011650 - Peptidase_M20_dimer

Pfam Domains:
PF01546 - Peptidase family M20/M25/M40
PF04389 - Peptidase family M28
PF07687 - Peptidase dimerisation domain

SCOP Domains:
53187 - Zn-dependent exopeptidases
55031 - Bacterial exopeptidase dimerisation domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1Q7L - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q03154
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserGenome BrowserGenome BrowserNo ortholog
 Gene Details Gene DetailsGene Details 
 Gene Sorter Gene SorterGene Sorter 
 RGDEnsemblFlyBaseWormBase 
 Protein SequenceProtein SequenceProtein SequenceProtein Sequence 
 AlignmentAlignmentAlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004046 aminoacylase activity
GO:0005515 protein binding
GO:0008237 metallopeptidase activity
GO:0016787 hydrolase activity
GO:0042802 identical protein binding
GO:0046872 metal ion binding

Biological Process:
GO:0006508 proteolysis
GO:0006520 cellular amino acid metabolic process
GO:0006805 xenobiotic metabolic process
GO:0008152 metabolic process

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AK298086 - Homo sapiens cDNA FLJ60317 complete cds, highly similar to Aminoacylase-1 (EC 3.5.1.14).
AK294015 - Homo sapiens cDNA FLJ60467 complete cds, moderately similar to Aminoacylase-1 (EC 3.5.1.14).
LF208607 - JP 2014500723-A/16110: Polycomb-Associated Non-Coding RNAs.
AK298274 - Homo sapiens cDNA FLJ60760 complete cds, highly similar to Aminoacylase-1 (EC 3.5.1.14).
BC000545 - Homo sapiens aminoacylase 1, mRNA (cDNA clone MGC:2251 IMAGE:3162222), complete cds.
BC003023 - Homo sapiens aminoacylase 1, mRNA (cDNA clone MGC:4105 IMAGE:2821665), complete cds.
D16307 - Homo sapiens mRNA for 45kDa protein, complete cds.
L07548 - Human aminoacylase-1 (ACY1) mRNA, complete cds.
LF378401 - JP 2014500723-A/185904: Polycomb-Associated Non-Coding RNAs.
D14524 - Homo sapiens ACY1 mRNA for aminoacylase-1, complete cds.
BC014112 - Homo sapiens aminoacylase 1, mRNA (cDNA clone MGC:20846 IMAGE:4543442), complete cds.
EU794586 - Homo sapiens epididymis secretory protein Li 5 (HEL-S-5) mRNA, complete cds.
DQ891908 - Synthetic construct clone IMAGE:100004538; FLH181312.01X; RZPDo839C01136D aminoacylase 1 (ACY1) gene, encodes complete protein.
DQ896834 - Synthetic construct Homo sapiens clone IMAGE:100011294; FLH181308.01L; RZPDo839C01135D aminoacylase 1 (ACY1) gene, encodes complete protein.
CU678334 - Synthetic construct Homo sapiens gateway clone IMAGE:100019270 5' read ACY1 mRNA.
KJ890626 - Synthetic construct Homo sapiens clone ccsbBroadEn_00020 ACY1 gene, encodes complete protein.
KR709880 - Synthetic construct Homo sapiens clone CCSBHm_00007066 ACY1 (ACY1) mRNA, encodes complete protein.
KR709881 - Synthetic construct Homo sapiens clone CCSBHm_00007067 ACY1 (ACY1) mRNA, encodes complete protein.
KR709882 - Synthetic construct Homo sapiens clone CCSBHm_00007068 ACY1 (ACY1) mRNA, encodes complete protein.
KR709883 - Synthetic construct Homo sapiens clone CCSBHm_00007069 ACY1 (ACY1) mRNA, encodes complete protein.
E04020 - cDNA sequence coding for human amino acylase I.
KU177890 - Homo sapiens aminoacylase 1 isoform 1 (ACY1) mRNA, partial cds.
KU177891 - Homo sapiens aminoacylase 1 isoform 2 (ACY1) mRNA, complete cds, alternatively spliced.
LF378398 - JP 2014500723-A/185901: Polycomb-Associated Non-Coding RNAs.
JD393454 - Sequence 374478 from Patent EP1572962.
JD339200 - Sequence 320224 from Patent EP1572962.
LF378394 - JP 2014500723-A/185897: Polycomb-Associated Non-Coding RNAs.
JD355060 - Sequence 336084 from Patent EP1572962.
MA444184 - JP 2018138019-A/16110: Polycomb-Associated Non-Coding RNAs.
MA613978 - JP 2018138019-A/185904: Polycomb-Associated Non-Coding RNAs.
MA613975 - JP 2018138019-A/185901: Polycomb-Associated Non-Coding RNAs.
MA613971 - JP 2018138019-A/185897: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00330 - Arginine and proline metabolism
hsa01100 - Metabolic pathways

Reactome (by CSHL, EBI, and GO)

Protein Q03154 (Reactome details) participates in the following event(s):

R-HSA-5433074 ACY:Zn2+ dimers hydrolyse mercapturic acids
R-HSA-5423646 Aflatoxin activation and detoxification
R-HSA-211859 Biological oxidations
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ACY1_HUMAN, NM_001198895, NP_001185824, Q03154
UCSC ID: uc003dcq.3
RefSeq Accession: NM_001198895
Protein: Q03154 (aka ACY1_HUMAN)
CCDS: CCDS2844.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001198895.1
exon count: 15CDS single in 3' UTR: no RNA size: 1673
ORF size: 1227CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2382.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.