Human Gene NSUN7 (uc003gvi.4)
Description: Homo sapiens NOP2/Sun domain family, member 7 (NSUN7), mRNA.
Transcript (Including UTRs)
Position: hg19 chr4:40,751,914-40,812,002 Size: 60,089 Total Exon Count: 11 Strand: +
Coding Region
Position: hg19 chr4:40,752,711-40,810,351 Size: 57,641 Coding Exon Count: 10
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF01189 - 16S rRNA methyltransferase RsmB/F
SCOP Domains: 53335 - S-adenosyl-L-methionine-dependent methyltransferases
ModBase Predicted Comparative 3D Structure on Q8NE18-2
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
BC042401 - Homo sapiens NOL1/NOP2/Sun domain family, member 7, mRNA (cDNA clone IMAGE:5168018).BC036568 - Homo sapiens NOL1/NOP2/Sun domain family, member 7, mRNA (cDNA clone MGC:41781 IMAGE:5272990), complete cds.AK024063 - Homo sapiens cDNA FLJ14001 fis, clone Y79AA1002298.AK304048 - Homo sapiens cDNA FLJ61535 complete cds.CU691376 - Synthetic construct Homo sapiens gateway clone IMAGE:100020906 5' read NSUN7 mRNA.HQ448035 - Synthetic construct Homo sapiens clone IMAGE:100071410; CCSB010511_02 NOL1/NOP2/Sun domain family, member 7 (NSUN7) gene, encodes complete protein.KJ903210 - Synthetic construct Homo sapiens clone ccsbBroadEn_12604 NSUN7 gene, encodes complete protein.JD489849 - Sequence 470873 from Patent EP1572962.JD060050 - Sequence 41074 from Patent EP1572962.JD202097 - Sequence 183121 from Patent EP1572962.JD443848 - Sequence 424872 from Patent EP1572962.JD255167 - Sequence 236191 from Patent EP1572962.JD537769 - Sequence 518793 from Patent EP1572962.JD328862 - Sequence 309886 from Patent EP1572962.AK094298 - Homo sapiens cDNA FLJ36979 fis, clone BRACE2006378.JD302646 - Sequence 283670 from Patent EP1572962.JD307524 - Sequence 288548 from Patent EP1572962.JD270335 - Sequence 251359 from Patent EP1572962.JD537574 - Sequence 518598 from Patent EP1572962.JD416502 - Sequence 397526 from Patent EP1572962.JD331698 - Sequence 312722 from Patent EP1572962.JD442485 - Sequence 423509 from Patent EP1572962.JD062090 - Sequence 43114 from Patent EP1572962.JD041955 - Sequence 22979 from Patent EP1572962.JD524522 - Sequence 505546 from Patent EP1572962.JD434267 - Sequence 415291 from Patent EP1572962.JD184753 - Sequence 165777 from Patent EP1572962.JD167223 - Sequence 148247 from Patent EP1572962.JD318336 - Sequence 299360 from Patent EP1572962.JD295252 - Sequence 276276 from Patent EP1572962.JD521966 - Sequence 502990 from Patent EP1572962.JD049951 - Sequence 30975 from Patent EP1572962.JD047322 - Sequence 28346 from Patent EP1572962.JD260062 - Sequence 241086 from Patent EP1572962.JD245979 - Sequence 227003 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: BC036568, Q8NE18-2UCSC ID: uc003gvi.4RefSeq Accession: NM_024677
Protein: Q8NE18-2 , splice isoform of Q8NE18
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
BC036568.2
exon count:
11 CDS single in 3' UTR:
no
RNA size:
3562
ORF size:
1428 CDS single in intron:
no
Alignment % ID:
99.86
txCdsPredict score:
2942.00 frame shift in genome:
no
% Coverage:
99.55
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.