Human Gene C4orf33 (uc003igu.4)
  Description: Homo sapiens chromosome 4 open reading frame 33 (C4orf33), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr4:130,014,829-130,033,843 Size: 19,015 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr4:130,023,766-130,032,946 Size: 9,181 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:130,014,829-130,033,843)mRNA (may differ from genome)Protein (199 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGeneCardsGeneNetworkH-INV
HGNCHPRDLynxMGIneXtProtPubMed
TreefamUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CD033_HUMAN
DESCRIPTION: RecName: Full=UPF0462 protein C4orf33;
SIMILARITY: Belongs to the UPF0462 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): C4orf33
CDC HuGE Published Literature: C4orf33
Positive Disease Associations: Blood Pressure , Coronary Artery Disease , Echocardiography , Hypertension , Inflammation , Maximal Midexpiratory Flow Rate , Obesity , Respiratory Function Tests , Stroke , Uric Acid
Related Studies:
  1. Blood Pressure
    Daniel Levy et al. BMC medical genetics 2007, Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness., BMC medical genetics. [PubMed 17903302]
    These results of genome-wide association testing for blood pressure and arterial stiffness phenotypes in an unselected community-based sample of adults may aid in the identification of the genetic basis of hypertension and arterial disease, help identify high risk individuals, and guide novel therapies for hypertension. Additional studies are needed to replicate any associations identified in these analyses.
  2. Coronary Artery Disease
    , , . [PubMed 0]
  3. Echocardiography
    Ramachandran S Vasan et al. BMC medical genetics 2007, Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study., BMC medical genetics. [PubMed 17903301]
    In hypothesis-generating GWAS of echocardiography, ETT and BA vascular function in a moderate-sized community-based sample, we identified several SNPs that are candidates for replication attempts and we provide a web-based GWAS resource for the research community.
           more ... click here to view the complete list

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.59 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 77.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -112.90364-0.310 Picture PostScript Text
3' UTR -195.44897-0.218 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q8N1A6
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding


-  Descriptions from all associated GenBank mRNAs
  AK091022 - Homo sapiens cDNA FLJ33703 fis, clone BRAWH2005578.
AX746735 - Sequence 260 from Patent EP1308459.
AK309229 - Homo sapiens cDNA, FLJ99270.
BX538164 - Homo sapiens mRNA; cDNA DKFZp686P2065 (from clone DKFZp686P2065); complete cds.
BC032582 - Homo sapiens chromosome 4 open reading frame 33, mRNA (cDNA clone MGC:45381 IMAGE:5494700), complete cds.
JD226909 - Sequence 207933 from Patent EP1572962.
JD396322 - Sequence 377346 from Patent EP1572962.
JD184762 - Sequence 165786 from Patent EP1572962.
JD160322 - Sequence 141346 from Patent EP1572962.
LF211387 - JP 2014500723-A/18890: Polycomb-Associated Non-Coding RNAs.
KJ900144 - Synthetic construct Homo sapiens clone ccsbBroadEn_09538 C4orf33 gene, encodes complete protein.
LF346035 - JP 2014500723-A/153538: Polycomb-Associated Non-Coding RNAs.
BC016358 - Homo sapiens chromosome 4 open reading frame 33, mRNA (cDNA clone IMAGE:4095238), partial cds.
JD550206 - Sequence 531230 from Patent EP1572962.
JD058907 - Sequence 39931 from Patent EP1572962.
JD528897 - Sequence 509921 from Patent EP1572962.
JD093835 - Sequence 74859 from Patent EP1572962.
JD155070 - Sequence 136094 from Patent EP1572962.
JD352337 - Sequence 333361 from Patent EP1572962.
JD352187 - Sequence 333211 from Patent EP1572962.
JD225301 - Sequence 206325 from Patent EP1572962.
JD358053 - Sequence 339077 from Patent EP1572962.
JD313844 - Sequence 294868 from Patent EP1572962.
MA581612 - JP 2018138019-A/153538: Polycomb-Associated Non-Coding RNAs.
MA446964 - JP 2018138019-A/18890: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: CD033_HUMAN, D3DNY2, NM_173487, NP_775758, Q6PJF3, Q8N1A6, Q8NBC5
UCSC ID: uc003igu.4
RefSeq Accession: NM_173487
Protein: Q8N1A6 (aka CD033_HUMAN)
CCDS: CCDS3741.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_173487.2
exon count: 6CDS single in 3' UTR: no RNA size: 1873
ORF size: 600CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1198.50frame shift in genome: no % Coverage: 99.36
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.