Human Gene TBC1D9B (uc003mlg.3)
Description: Homo sapiens TBC1 domain family, member 9B (with GRAM domain) (TBC1D9B), transcript variant 2, mRNA.
Transcript (Including UTRs)
Position: hg19 chr5:179,289,071-179,298,805 Size: 9,735 Total Exon Count: 8 Strand: -
Coding Region
Position: hg19 chr5:179,290,448-179,298,473 Size: 8,026 Coding Exon Count: 7
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR011992 - EF-hand-like_dom
IPR018249 - EF_HAND_2
SCOP Domains: 47473 - EF-hand
ModBase Predicted Comparative 3D Structure on G3V133
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AB014576 - Homo sapiens KIAA0676 mRNA for KIAA0676 protein.BC129994 - Homo sapiens TBC1 domain family, member 9B (with GRAM domain), mRNA (cDNA clone MGC:157757 IMAGE:40129194), complete cds.AB449893 - Homo sapiens TBC1D9B mRNA for TBC1 domain family, member 9B, complete cds.AB463306 - Synthetic construct DNA, clone: pF1KA0676, Homo sapiens TBC1D9B gene for TBC1 domain family, member 9B, without stop codon, in Flexi system.AK026096 - Homo sapiens cDNA: FLJ22443 fis, clone HRC09391.BC000701 - Homo sapiens TBC1 domain family, member 9B (with GRAM domain), mRNA (cDNA clone IMAGE:3347537), complete cds.BC008919 - Homo sapiens TBC1 domain family, member 9B (with GRAM domain), mRNA (cDNA clone IMAGE:3627916), complete cds.BC080659 - Homo sapiens TBC1 domain family, member 9B (with GRAM domain), mRNA (cDNA clone IMAGE:6160217), partial cds.BC110400 - Homo sapiens cDNA clone IMAGE:5557148.AK001473 - Homo sapiens cDNA FLJ10611 fis, clone NT2RP2005315, highly similar to Homo sapiens mRNA for KIAA0676 protein.AK001196 - Homo sapiens cDNA FLJ10334 fis, clone NT2RM2000649, highly similar to Homo sapiens mRNA for KIAA0676 protein.BX641107 - Homo sapiens mRNA; cDNA DKFZp686O07131 (from clone DKFZp686O07131).JD566624 - Sequence 547648 from Patent EP1572962.JD124606 - Sequence 105630 from Patent EP1572962.JD484204 - Sequence 465228 from Patent EP1572962.JD115292 - Sequence 96316 from Patent EP1572962.JD162592 - Sequence 143616 from Patent EP1572962.JD260972 - Sequence 241996 from Patent EP1572962.JD311548 - Sequence 292572 from Patent EP1572962.JD207178 - Sequence 188202 from Patent EP1572962.JD102490 - Sequence 83514 from Patent EP1572962.JD226323 - Sequence 207347 from Patent EP1572962.JD460125 - Sequence 441149 from Patent EP1572962.JD552129 - Sequence 533153 from Patent EP1572962.JD429522 - Sequence 410546 from Patent EP1572962.BC031697 - Homo sapiens TBC1 domain family, member 9B (with GRAM domain), mRNA (cDNA clone IMAGE:4745422), with apparent retained intron.AK123874 - Homo sapiens cDNA FLJ41880 fis, clone OCBBF2021020, weakly similar to Homo sapiens mRNA for vascular Rab-GAP/TBC-containing protein.AK074791 - Homo sapiens cDNA FLJ90310 fis, clone NT2RP2001200, highly similar to Homo sapiens mRNA for KIAA0676 protein.JD277778 - Sequence 258802 from Patent EP1572962.JD417183 - Sequence 398207 from Patent EP1572962.JD487331 - Sequence 468355 from Patent EP1572962.JD243879 - Sequence 224903 from Patent EP1572962.JD396828 - Sequence 377852 from Patent EP1572962.JD097886 - Sequence 78910 from Patent EP1572962.JD133320 - Sequence 114344 from Patent EP1572962.JD399197 - Sequence 380221 from Patent EP1572962.JD427255 - Sequence 408279 from Patent EP1572962.JD527027 - Sequence 508051 from Patent EP1572962.JD201170 - Sequence 182194 from Patent EP1572962.JD193816 - Sequence 174840 from Patent EP1572962.JD546240 - Sequence 527264 from Patent EP1572962.JD045207 - Sequence 26231 from Patent EP1572962.JD281560 - Sequence 262584 from Patent EP1572962.JD418385 - Sequence 399409 from Patent EP1572962.JD255306 - Sequence 236330 from Patent EP1572962.JD191485 - Sequence 172509 from Patent EP1572962.JD399862 - Sequence 380886 from Patent EP1572962.JD541486 - Sequence 522510 from Patent EP1572962.JD105509 - Sequence 86533 from Patent EP1572962.AK223509 - Homo sapiens mRNA for KIAA0676 protein (Fragment) variant, clone: FCC121H06.KJ902274 - Synthetic construct Homo sapiens clone ccsbBroadEn_11668 TBC1D9B gene, encodes complete protein.JF432540 - Synthetic construct Homo sapiens clone IMAGE:100073763 TBC1 domain family, member 9B (with GRAM domain) (TBC1D9B) gene, encodes complete protein.KJ906078 - Synthetic construct Homo sapiens clone ccsbBroadEn_15748 TBC1D9B gene, encodes complete protein.AK304757 - Homo sapiens cDNA FLJ59011 complete cds, moderately similar to TBC1 domain family member 8.AK127158 - Homo sapiens cDNA FLJ45221 fis, clone BRCAN2019907.JD282553 - Sequence 263577 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: BC000701, G3V133, G3V133_HUMAN, hCG_15288, KIAA0676, NM_015043, NP_055858UCSC ID: uc003mlg.3RefSeq Accession: NM_015043
Protein: G3V133
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
BC000701.2
exon count:
8 CDS single in 3' UTR:
no
RNA size:
2785
ORF size:
1230 CDS single in intron:
no
Alignment % ID:
99.89
txCdsPredict score:
2660.00 frame shift in genome:
no
% Coverage:
98.74
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.