Human Gene FGD2 (uc003onf.3)
  Description: Homo sapiens FYVE, RhoGEF and PH domain containing 2 (FGD2), mRNA.
RefSeq Summary (NM_173558): The protein encoded by this gene belongs to a family of guanine nucleotide exchange factors (GEFs) which control cytoskeleton-dependent membrane rearrangements by activating the cell division cycle 42 (CDC42) protein. This gene is expressed in B lymphocytes, macrophages, and dendritic cells. The encoded protein may play a role in leukocyte signaling and vesicle trafficking in antigen-presenting cells in the immune system. [provided by RefSeq, Oct 2016].
Transcript (Including UTRs)
   Position: hg19 chr6:36,973,423-36,977,791 Size: 4,369 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr6:36,973,594-36,976,856 Size: 3,263 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:36,973,423-36,977,791)mRNA (may differ from genome)Protein (104 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsGeneNetwork
H-INVHGNCLynxMGIPubMedUniProtKB
Wikipedia

-  Comments and Description Text from UniProtKB
  ID: F8WEZ2_HUMAN
DESCRIPTION: SubName: Full=FYVE, RhoGEF and PH domain-containing protein 2;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 93.24 RPKM in Spleen
Total median expression: 296.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -54.40171-0.318 Picture PostScript Text
3' UTR -351.51935-0.376 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on F8WEZ2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC062363 - Homo sapiens FYVE, RhoGEF and PH domain containing 2, mRNA (cDNA clone IMAGE:5440975), with apparent retained intron.
BC023645 - Homo sapiens FYVE, RhoGEF and PH domain containing 2, mRNA (cDNA clone MGC:29450 IMAGE:5087501), complete cds.
GQ900971 - Homo sapiens clone HEL-T-83 epididymis secretory sperm binding protein mRNA, complete cds.
AK290419 - Homo sapiens cDNA FLJ75636 complete cds, highly similar to Homo sapiens FYVE, RhoGEF and PH domain containing 2, mRNA.
AK301156 - Homo sapiens cDNA FLJ61425 complete cds, highly similar to FYVE, RhoGEF and PH domain-containing protein2.
AK300964 - Homo sapiens cDNA FLJ58428 complete cds, highly similar to FYVE, RhoGEF and PH domain-containing protein 2.
AK092732 - Homo sapiens cDNA FLJ35413 fis, clone SMINT2000602, highly similar to Faciogenital dysplasia protein 2.
AX747694 - Sequence 1219 from Patent EP1308459.
AK024456 - Homo sapiens mRNA for FLJ00048 protein, partial cds.
JD039962 - Sequence 20986 from Patent EP1572962.
BC053655 - Homo sapiens FYVE, RhoGEF and PH domain containing 2, mRNA (cDNA clone MGC:61693 IMAGE:5755893), complete cds.
BX648164 - Homo sapiens mRNA; cDNA DKFZp686H1440 (from clone DKFZp686H1440).
JD273509 - Sequence 254533 from Patent EP1572962.
JD447787 - Sequence 428811 from Patent EP1572962.
KJ904034 - Synthetic construct Homo sapiens clone ccsbBroadEn_13428 FGD2 gene, encodes complete protein.
DQ893612 - Synthetic construct clone IMAGE:100006242; FLH182471.01X; RZPDo839G07138D FYVE, RhoGEF and PH domain containing 2 (FGD2) gene, encodes complete protein.
DQ894928 - Synthetic construct Homo sapiens clone IMAGE:100009388; FLH182467.01L; RZPDo839G07137D FYVE, RhoGEF and PH domain containing 2 (FGD2) gene, encodes complete protein.
JD475659 - Sequence 456683 from Patent EP1572962.
JD422814 - Sequence 403838 from Patent EP1572962.
JD229671 - Sequence 210695 from Patent EP1572962.
JD453737 - Sequence 434761 from Patent EP1572962.
JD117518 - Sequence 98542 from Patent EP1572962.
JD523782 - Sequence 504806 from Patent EP1572962.
JD430658 - Sequence 411682 from Patent EP1572962.
JD557773 - Sequence 538797 from Patent EP1572962.
JD530802 - Sequence 511826 from Patent EP1572962.
JD171512 - Sequence 152536 from Patent EP1572962.
JD047412 - Sequence 28436 from Patent EP1572962.
JD047413 - Sequence 28437 from Patent EP1572962.
JD085600 - Sequence 66624 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CU687545, F8WEZ2, F8WEZ2_HUMAN
UCSC ID: uc003onf.3
RefSeq Accession: NM_173558
Protein: F8WEZ2

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: CU687545.1
exon count: 2CDS single in 3' UTR: no RNA size: 1172
ORF size: 315CDS single in intron: no Alignment % ID: 99.36
txCdsPredict score: 749.00frame shift in genome: no % Coverage: 26.54
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 950# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.