Human Gene TENT5A (uc003pjh.1)
Description: Homo sapiens family with sequence similarity 46, member A (TENT5A), mRNA.
Transcript (Including UTRs)
Position: hg19 chr6:82,461,307-82,462,378 Size: 1,072 Total Exon Count: 2 Strand: -
Coding Region
Position: hg19 chr6:82,461,307-82,461,858 Size: 552 Coding Exon Count: 1
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
LF208567 - JP 2014500723-A/16070: Polycomb-Associated Non-Coding RNAs.AF350451 - Homo sapiens C6orf37 mRNA, complete cds.BX648876 - Homo sapiens mRNA; cDNA DKFZp686A09243 (from clone DKFZp686A09243).AK056057 - Homo sapiens cDNA FLJ31495 fis, clone NT2NE2004916.AJ420592 - Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 994593.BC000683 - Homo sapiens family with sequence similarity 46, member A, mRNA (cDNA clone MGC:1079 IMAGE:3349780), complete cds.AK000044 - Homo sapiens cDNA FLJ20037 fis, clone COL00314.BC007351 - Homo sapiens family with sequence similarity 46, member A, mRNA (cDNA clone MGC:16066 IMAGE:3615536), complete cds.AK292109 - Homo sapiens cDNA FLJ76358 complete cds.AY740520 - Homo sapiens HBV XAg-transactivated protein 11 (XTP11) mRNA, complete cds.FJ211061 - Homo sapiens HBV XAg-transactivated protein 11 splice variant 1 (XTP11) mRNA, complete cds, alternatively spliced.HQ447932 - Synthetic construct Homo sapiens clone IMAGE:100071293; CCSB003260_01 family with sequence similarity 46, member A (FAM46A) gene, encodes complete protein.KJ894213 - Synthetic construct Homo sapiens clone ccsbBroadEn_03607 FAM46A gene, encodes complete protein.KJ905500 - Synthetic construct Homo sapiens clone ccsbBroadEn_15105 FAM46A gene, encodes complete protein.CU674334 - Synthetic construct Homo sapiens gateway clone IMAGE:100018297 5' read FAM46A mRNA.CU675631 - Synthetic construct Homo sapiens gateway clone IMAGE:100017291 5' read FAM46A mRNA.LF377988 - JP 2014500723-A/185491: Polycomb-Associated Non-Coding RNAs.JD282725 - Sequence 263749 from Patent EP1572962.MA444144 - JP 2018138019-A/16070: Polycomb-Associated Non-Coding RNAs.MA613565 - JP 2018138019-A/185491: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: AJ420592, FAM46A, NM_017633, NP_060103UCSC ID: uc003pjh.1RefSeq Accession: NM_017633
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
AJ420592.1
exon count:
2 CDS single in 3' UTR:
no
RNA size:
1557
ORF size:
552 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
1252.00 frame shift in genome:
no
% Coverage:
43.80
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
no
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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for a detailed description of the fields of the table above.
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.