Human Gene TENT5A (uc003pjh.1)
  Description: Homo sapiens family with sequence similarity 46, member A (TENT5A), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr6:82,461,307-82,462,378 Size: 1,072 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr6:82,461,307-82,461,858 Size: 552 Coding Exon Count: 1 

Page IndexSequence and LinksPrimersGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:82,461,307-82,462,378)mRNA (may differ from genome)Protein (184 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGeneCardsGeneNetworkH-INVLynx
MGIOMIMPubMedTreefamWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 25.25 RPKM in Minor Salivary Gland
Total median expression: 272.73 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -54.80130-0.422 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF208567 - JP 2014500723-A/16070: Polycomb-Associated Non-Coding RNAs.
AF350451 - Homo sapiens C6orf37 mRNA, complete cds.
BX648876 - Homo sapiens mRNA; cDNA DKFZp686A09243 (from clone DKFZp686A09243).
AK056057 - Homo sapiens cDNA FLJ31495 fis, clone NT2NE2004916.
AJ420592 - Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 994593.
BC000683 - Homo sapiens family with sequence similarity 46, member A, mRNA (cDNA clone MGC:1079 IMAGE:3349780), complete cds.
AK000044 - Homo sapiens cDNA FLJ20037 fis, clone COL00314.
BC007351 - Homo sapiens family with sequence similarity 46, member A, mRNA (cDNA clone MGC:16066 IMAGE:3615536), complete cds.
AK292109 - Homo sapiens cDNA FLJ76358 complete cds.
AY740520 - Homo sapiens HBV XAg-transactivated protein 11 (XTP11) mRNA, complete cds.
FJ211061 - Homo sapiens HBV XAg-transactivated protein 11 splice variant 1 (XTP11) mRNA, complete cds, alternatively spliced.
HQ447932 - Synthetic construct Homo sapiens clone IMAGE:100071293; CCSB003260_01 family with sequence similarity 46, member A (FAM46A) gene, encodes complete protein.
KJ894213 - Synthetic construct Homo sapiens clone ccsbBroadEn_03607 FAM46A gene, encodes complete protein.
KJ905500 - Synthetic construct Homo sapiens clone ccsbBroadEn_15105 FAM46A gene, encodes complete protein.
CU674334 - Synthetic construct Homo sapiens gateway clone IMAGE:100018297 5' read FAM46A mRNA.
CU675631 - Synthetic construct Homo sapiens gateway clone IMAGE:100017291 5' read FAM46A mRNA.
LF377988 - JP 2014500723-A/185491: Polycomb-Associated Non-Coding RNAs.
JD282725 - Sequence 263749 from Patent EP1572962.
MA444144 - JP 2018138019-A/16070: Polycomb-Associated Non-Coding RNAs.
MA613565 - JP 2018138019-A/185491: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AJ420592, FAM46A, NM_017633, NP_060103
UCSC ID: uc003pjh.1
RefSeq Accession: NM_017633

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AJ420592.1
exon count: 2CDS single in 3' UTR: no RNA size: 1557
ORF size: 552CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1252.00frame shift in genome: no % Coverage: 43.80
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.