Human Gene SNHG5 (uc003pld.4)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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Comparative Toxicogenomics Database (CTD)
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The following chemicals interact with this gene
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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Press "+" in the title bar above to open this section.
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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BC009220 - Homo sapiens chromosome 6 open reading frame 160, mRNA (cDNA clone IMAGE:3927795). BC108291 - Homo sapiens chromosome 6 open reading frame 160, mRNA (cDNA clone IMAGE:4803868). AK311192 - Homo sapiens cDNA, FLJ18234.
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Other Names for This Gene
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Alternate Gene Symbols: NR_003038 UCSC ID: uc003pld.4 RefSeq Accession: NR_003038
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Gene Model Information
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category:
| noncoding
| nonsense-mediated-decay:
| no
| RNA accession:
| NR_003038.2
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exon count:
| 6 | CDS single in 3' UTR:
| no
| RNA size:
| 524 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 100.00 |
txCdsPredict score:
| 171.00 | frame shift in genome:
| no
| % Coverage:
| 96.76 |
has start codon:
| no
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| no
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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