Human Gene BEND3 (uc003prs.2)
Description: Homo sapiens BEN domain containing 3 (BEND3), mRNA.
Transcript (Including UTRs)
Position: hg19 chr6:107,386,385-107,435,636 Size: 49,252 Total Exon Count: 5 Strand: -
Coding Region
Position: hg19 chr6:107,389,908-107,420,489 Size: 30,582 Coding Exon Count: 3
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: BEND3_HUMAN
DESCRIPTION: RecName: Full=BEN domain-containing protein 3;
SIMILARITY: Contains 4 BEN domains.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
Press "+" in the title bar above to open this section.
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
Press "+" in the title bar above to open this section.
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR018379 - BEN_domain
Pfam Domains: PF10523 - BEN domain
ModBase Predicted Comparative 3D Structure on Q5T5X7
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AB046773 - Homo sapiens mRNA for KIAA1553 protein, partial cds.AK026996 - Homo sapiens cDNA: FLJ23343 fis, clone HEP13562.JD429495 - Sequence 410519 from Patent EP1572962.JD188456 - Sequence 169480 from Patent EP1572962.JD548332 - Sequence 529356 from Patent EP1572962.JD454585 - Sequence 435609 from Patent EP1572962.JD312369 - Sequence 293393 from Patent EP1572962.JD111071 - Sequence 92095 from Patent EP1572962.DQ588206 - Homo sapiens piRNA piR-55318, complete sequence.JD089843 - Sequence 70867 from Patent EP1572962.JD137577 - Sequence 118601 from Patent EP1572962.JD530191 - Sequence 511215 from Patent EP1572962.JD564814 - Sequence 545838 from Patent EP1572962.JD333566 - Sequence 314590 from Patent EP1572962.JD525250 - Sequence 506274 from Patent EP1572962.DQ591238 - Homo sapiens piRNA piR-58350, complete sequence.JD453565 - Sequence 434589 from Patent EP1572962.JD053024 - Sequence 34048 from Patent EP1572962.JD565935 - Sequence 546959 from Patent EP1572962.JD307404 - Sequence 288428 from Patent EP1572962.JD179999 - Sequence 161023 from Patent EP1572962.JD235122 - Sequence 216146 from Patent EP1572962.JD427410 - Sequence 408434 from Patent EP1572962.JD450784 - Sequence 431808 from Patent EP1572962.JD451287 - Sequence 432311 from Patent EP1572962.JD149144 - Sequence 130168 from Patent EP1572962.JD243423 - Sequence 224447 from Patent EP1572962.JD193076 - Sequence 174100 from Patent EP1572962.JD340296 - Sequence 321320 from Patent EP1572962.JD167796 - Sequence 148820 from Patent EP1572962.JD537102 - Sequence 518126 from Patent EP1572962.JD059166 - Sequence 40190 from Patent EP1572962.JD455169 - Sequence 436193 from Patent EP1572962.JD515235 - Sequence 496259 from Patent EP1572962.JD060624 - Sequence 41648 from Patent EP1572962.JD482922 - Sequence 463946 from Patent EP1572962.JD403424 - Sequence 384448 from Patent EP1572962.JD384397 - Sequence 365421 from Patent EP1572962.JD051712 - Sequence 32736 from Patent EP1572962.JD129842 - Sequence 110866 from Patent EP1572962.JD144844 - Sequence 125868 from Patent EP1572962.JD228392 - Sequence 209416 from Patent EP1572962.JD450451 - Sequence 431475 from Patent EP1572962.DQ577114 - Homo sapiens piRNA piR-45226, complete sequence.JD382913 - Sequence 363937 from Patent EP1572962.JD135599 - Sequence 116623 from Patent EP1572962.JD077635 - Sequence 58659 from Patent EP1572962.JD266937 - Sequence 247961 from Patent EP1572962.JD134402 - Sequence 115426 from Patent EP1572962.JD408794 - Sequence 389818 from Patent EP1572962.DQ570506 - Homo sapiens piRNA piR-30618, complete sequence.DQ570505 - Homo sapiens piRNA piR-30617, complete sequence.JD097766 - Sequence 78790 from Patent EP1572962.BC131628 - Homo sapiens BEN domain containing 3, mRNA (cDNA clone MGC:149812 IMAGE:40118705), complete cds.KJ899361 - Synthetic construct Homo sapiens clone ccsbBroadEn_08755 BEND3 gene, encodes complete protein.DQ583300 - Homo sapiens piRNA piR-50412, complete sequence.DQ576823 - Homo sapiens piRNA piR-44935, complete sequence.DQ571563 - Homo sapiens piRNA piR-31675, complete sequence.DQ580664 - Homo sapiens piRNA piR-48776, complete sequence.DQ581075 - Homo sapiens piRNA piR-49187, complete sequence.DQ574487 - Homo sapiens piRNA piR-42599, complete sequence.JD532083 - Sequence 513107 from Patent EP1572962.JD133775 - Sequence 114799 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: A2RRH2, BEND3_HUMAN, KIAA1553, NM_001080450, NP_001073919, Q5T5X7, Q9HCL9UCSC ID: uc003prs.2RefSeq Accession: NM_001080450
Protein: Q5T5X7
(aka BEND3_HUMAN)
CCDS: CCDS34507.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001080450.2
exon count:
5 CDS single in 3' UTR:
no
RNA size:
6660
ORF size:
2487 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
4760.50 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
Click here
for a detailed description of the fields of the table above.
Methods, Credits, and Use Restrictions
Click here
for details on how this gene model was made and data restrictions if any.