Human Gene SOD2-OT1 (uc003qsp.4)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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MalaCards Disease Associations
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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AK097395 - Homo sapiens cDNA FLJ40076 fis, clone TESTI2000874, highly similar to Superoxide dismutase [Mn], mitochondrial precursor (EC 1.15.1.1). BC067868 - Homo sapiens cDNA clone IMAGE:5287966. JD112198 - Sequence 93222 from Patent EP1572962. LF210694 - JP 2014500723-A/18197: Polycomb-Associated Non-Coding RNAs. JD022696 - Sequence 3720 from Patent EP1572962. JD030083 - Sequence 11107 from Patent EP1572962. JD030093 - Sequence 11117 from Patent EP1572962. LF385162 - JP 2014500723-A/192665: Polycomb-Associated Non-Coding RNAs. MA620739 - JP 2018138019-A/192665: Polycomb-Associated Non-Coding RNAs. MA446271 - JP 2018138019-A/18197: Polycomb-Associated Non-Coding RNAs. MP015453 - Sequence 656 from Patent WO2019016252.
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Other Names for This Gene
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Alternate Gene Symbols: LOC100129518, NR_037166, uc003qsp.3 UCSC ID: uc003qsp.4 RefSeq Accession: NR_037166
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Gene Model Information
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category:
| antisense
| nonsense-mediated-decay:
| no
| RNA accession:
| NR_037166.1
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exon count:
| 2 | CDS single in 3' UTR:
| no
| RNA size:
| 1718 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 100.00 |
txCdsPredict score:
| 584.50 | frame shift in genome:
| no
| % Coverage:
| 99.94 |
has start codon:
| no
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| no
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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