Human Gene SOD2-OT1 (uc003qsp.4)
  Description: Homo sapiens uncharacterized SOD2-OT1 (SOD2-OT1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr6:160,181,291-160,183,364 Size: 2,074 Total Exon Count: 2 Strand: -


Page IndexSequence and LinksPrimersMalaCardsRNA-Seq ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:160,181,291-160,183,364)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerLynxMalacardsPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SOD2-OT1
Diseases sorted by gene-association score: microvascular complications of diabetes 6 (6)

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 238.45 RPKM in Muscle - Skeletal
Total median expression: 1398.06 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK097395 - Homo sapiens cDNA FLJ40076 fis, clone TESTI2000874, highly similar to Superoxide dismutase [Mn], mitochondrial precursor (EC 1.15.1.1).
BC067868 - Homo sapiens cDNA clone IMAGE:5287966.
JD112198 - Sequence 93222 from Patent EP1572962.
LF210694 - JP 2014500723-A/18197: Polycomb-Associated Non-Coding RNAs.
JD022696 - Sequence 3720 from Patent EP1572962.
JD030083 - Sequence 11107 from Patent EP1572962.
JD030093 - Sequence 11117 from Patent EP1572962.
LF385162 - JP 2014500723-A/192665: Polycomb-Associated Non-Coding RNAs.
MA620739 - JP 2018138019-A/192665: Polycomb-Associated Non-Coding RNAs.
MA446271 - JP 2018138019-A/18197: Polycomb-Associated Non-Coding RNAs.
MP015453 - Sequence 656 from Patent WO2019016252.

-  Other Names for This Gene
  Alternate Gene Symbols: LOC100129518, NR_037166, uc003qsp.3
UCSC ID: uc003qsp.4
RefSeq Accession: NR_037166

-  Gene Model Information
 
category: antisense nonsense-mediated-decay: no RNA accession: NR_037166.1
exon count: 2CDS single in 3' UTR: no RNA size: 1718
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 584.50frame shift in genome: no % Coverage: 99.94
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.