Human Gene NSUN5P2 (uc003twl.3)
  Description: Homo sapiens NOP2/Sun domain family, member 5 pseudogene 2 (NSUN5P2), non-coding RNA.
RefSeq Summary (NR_033323): This locus represents a transcribed pseudogene of a nearby locus on chromosome 7, which encodes a putative methyltransferase. There is also a third closely related pseudogene locus in this region. There is extensive alternative splicing at this locus. [provided by RefSeq, Jul 2013].
Transcript (Including UTRs)
   Position: hg19 chr7:72,418,832-72,422,834 Size: 4,003 Total Exon Count: 7 Strand: -


Page IndexSequence and LinksPrimersMalaCardsRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:72,418,832-72,422,834)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerH-INVHGNCLynxMalacards
PubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NSUN5P2
Diseases sorted by gene-association score: williams-beuren syndrome (6)

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 32.90 RPKM in Prostate
Total median expression: 774.57 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC056405 - Homo sapiens NOL1/NOP2/Sun domain family, member 5C, mRNA (cDNA clone IMAGE:5216240), complete cds.
BC007488 - Homo sapiens NOL1/NOP2/Sun domain family, member 5C, mRNA (cDNA clone IMAGE:3634684).
BC082753 - Homo sapiens NOL1/NOP2/Sun domain family, member 5C, mRNA (cDNA clone MGC:99493 IMAGE:4542435), complete cds.
BC106049 - Homo sapiens NOL1/NOP2/Sun domain family, member 5C, mRNA (cDNA clone IMAGE:4938180), partial cds.
BC050591 - Homo sapiens NOL1/NOP2/Sun domain family, member 5C, mRNA (cDNA clone IMAGE:6526590), containing frame-shift errors.
BC066297 - Homo sapiens NOL1/NOP2/Sun domain family, member 5C, mRNA (cDNA clone IMAGE:4797351), with apparent retained intron.
AF416611 - Homo sapiens Williams-Beuren Syndrome critical region protein 20 copy C (WBSCR20C) mRNA, complete cds.
AL833016 - Homo sapiens mRNA; cDNA DKFZp666P104 (from clone DKFZp666P104).
AF420250 - Homo sapiens NOL1R2 mRNA, complete cds.
AK021688 - Homo sapiens cDNA FLJ11626 fis, clone HEMBA1004203, weakly similar to NUCLEOLAR PROTEIN NOP2.
AL117583 - Homo sapiens mRNA; cDNA DKFZp434K058 (from clone DKFZp434K058).
BC107111 - Homo sapiens NOL1/NOP2/Sun domain family, member 5C, mRNA (cDNA clone IMAGE:40022621), complete cds.
JD023112 - Sequence 4136 from Patent EP1572962.
JD056174 - Sequence 37198 from Patent EP1572962.
JD099106 - Sequence 80130 from Patent EP1572962.
KJ901192 - Synthetic construct Homo sapiens clone ccsbBroadEn_10586 NSUN5P2 gene, encodes complete protein.
JD470616 - Sequence 451640 from Patent EP1572962.
JD329446 - Sequence 310470 from Patent EP1572962.
JD027804 - Sequence 8828 from Patent EP1572962.
JD195000 - Sequence 176024 from Patent EP1572962.
JD436549 - Sequence 417573 from Patent EP1572962.
AK292107 - Homo sapiens cDNA FLJ75140 complete cds.
JD387363 - Sequence 368387 from Patent EP1572962.
JD387362 - Sequence 368386 from Patent EP1572962.
JD450813 - Sequence 431837 from Patent EP1572962.
JD098523 - Sequence 79547 from Patent EP1572962.
JD412971 - Sequence 393995 from Patent EP1572962.
JD164719 - Sequence 145743 from Patent EP1572962.
JD298413 - Sequence 279437 from Patent EP1572962.
JD239371 - Sequence 220395 from Patent EP1572962.
JD557575 - Sequence 538599 from Patent EP1572962.
BC093976 - Homo sapiens NOL1/NOP2/Sun domain family, member 5C, mRNA (cDNA clone IMAGE:7939821), complete cds.
BC101515 - Homo sapiens NOL1/NOP2/Sun domain family, member 5C, mRNA (cDNA clone IMAGE:8069021), complete cds.
KJ906471 - Synthetic construct Homo sapiens clone ccsbBroadEn_16141 NSUN5P2 gene, encodes complete protein.
JD125982 - Sequence 107006 from Patent EP1572962.
AK315927 - Homo sapiens cDNA, FLJ78826 complete cds, highly similar to Homo sapiens NOL1/NOP2/Sun domain family, member 5 (NSUN5), transcript variant 1, mRNA.
KJ906470 - Synthetic construct Homo sapiens clone ccsbBroadEn_16140 NSUN5P2 gene, encodes complete protein.
AK303622 - Homo sapiens cDNA FLJ58870 complete cds, highly similar to Homo sapiens NOL1/NOP2/Sun domain family, member 5 (NSUN5), transcript variant 1, mRNA.
JD170416 - Sequence 151440 from Patent EP1572962.
JD333379 - Sequence 314403 from Patent EP1572962.
JD152523 - Sequence 133547 from Patent EP1572962.
JD547473 - Sequence 528497 from Patent EP1572962.
JD101352 - Sequence 82376 from Patent EP1572962.
JD401236 - Sequence 382260 from Patent EP1572962.
JD392224 - Sequence 373248 from Patent EP1572962.
JD493006 - Sequence 474030 from Patent EP1572962.
JD546840 - Sequence 527864 from Patent EP1572962.
JD112674 - Sequence 93698 from Patent EP1572962.
JD389803 - Sequence 370827 from Patent EP1572962.
JD500846 - Sequence 481870 from Patent EP1572962.
JD137007 - Sequence 118031 from Patent EP1572962.
JD132083 - Sequence 113107 from Patent EP1572962.
JD377267 - Sequence 358291 from Patent EP1572962.
JD273124 - Sequence 254148 from Patent EP1572962.
JD207771 - Sequence 188795 from Patent EP1572962.
JD402739 - Sequence 383763 from Patent EP1572962.
JD071410 - Sequence 52434 from Patent EP1572962.
JD287893 - Sequence 268917 from Patent EP1572962.
JD358368 - Sequence 339392 from Patent EP1572962.
JD383942 - Sequence 364966 from Patent EP1572962.
JD383941 - Sequence 364965 from Patent EP1572962.
JD163393 - Sequence 144417 from Patent EP1572962.
JD468097 - Sequence 449121 from Patent EP1572962.
JD408675 - Sequence 389699 from Patent EP1572962.
JD227864 - Sequence 208888 from Patent EP1572962.
JD487901 - Sequence 468925 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC106049
UCSC ID: uc003twl.3
RefSeq Accession: NR_033323

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: BC106049.1
exon count: 7CDS single in 3' UTR: no RNA size: 1349
ORF size: 0CDS single in intron: no Alignment % ID: 99.77
txCdsPredict score: 336.00frame shift in genome: no % Coverage: 98.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.