Human Gene STYXL1 (uc003uen.1)
Description: Homo sapiens serine/threonine/tyrosine interacting-like 1 (STYXL1), mRNA.
Transcript (Including UTRs)
Position: hg19 chr7:75,629,671-75,659,842 Size: 30,172 Total Exon Count: 8 Strand: -
Coding Region
Position: hg19 chr7:75,629,770-75,659,841 Size: 30,072 Coding Exon Count: 8
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF00581 - Rhodanese-like domain
SCOP Domains: 52799 - (Phosphotyrosine protein) phosphatases II
52821 - Rhodanese/Cell cycle control phosphatase
ModBase Predicted Comparative 3D Structure on Q9Y6J8-2
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
BX537896 - Homo sapiens mRNA; cDNA DKFZp686O05147 (from clone DKFZp686O05147); complete cds.AF069762 - Homo sapiens map kinase phosphatase-like protein MK-STYX mRNA, complete cds.BC024035 - Homo sapiens serine/threonine/tyrosine interacting-like 1, mRNA (cDNA clone MGC:674 IMAGE:2988900), complete cds.AY927581 - Homo sapiens mRNA sequence.AF188202 - Homo sapiens map kinase phosphatase-like protein MK-STYX mRNA, alternatively spliced, partial cds.AF188203 - Homo sapiens map kinase phosphatase-like protein MK-STYX mRNA, alternatively spliced, partial cds.AF188204 - Homo sapiens map kinase phosphatase-like protein MK-STYX mRNA, alternatively spliced, partial cds.DQ893420 - Synthetic construct clone IMAGE:100006050; FLH199506.01X; RZPDo839F0282D serine/threonine/tyrosine interacting-like 1 (STYXL1) gene, encodes complete protein.DQ896739 - Synthetic construct Homo sapiens clone IMAGE:100011199; FLH199412.01L; RZPDo839F0281D serine/threonine/tyrosine interacting-like 1 (STYXL1) gene, encodes complete protein.EU831604 - Synthetic construct Homo sapiens clone HAIB:100066633; DKFZo007C0119 serine/threonine/tyrosine interacting-like 1 protein (STYXL1) gene, encodes complete protein.EU831691 - Synthetic construct Homo sapiens clone HAIB:100066720; DKFZo003C0120 serine/threonine/tyrosine interacting-like 1 protein (STYXL1) gene, encodes complete protein.AF188201 - Homo sapiens map kinase phosphatase-like protein MK-STYX mRNA, alternatively spliced, partial cds.AF169647 - Homo sapiens alternatively spliced dual specificity phosphatase inhibitor MK-STYX (MKSTYX) mRNA, partial cds.AF169648 - Homo sapiens alternatively spliced dual specificity phosphatase inhibitor MK-STYX (MKSTYX) mRNA, partial cds.AK308828 - Homo sapiens cDNA, FLJ98869.AK308912 - Homo sapiens cDNA, FLJ98953.
Other Names for This Gene
Alternate Gene Symbols: AY927581, DUSP24, MKSTYX, NM_016086, NP_057170, Q9Y6J8-2UCSC ID: uc003uen.1RefSeq Accession: NM_016086
Protein: Q9Y6J8-2 , splice isoform of Q9Y6J8
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
AY927581.1
exon count:
8 CDS single in 3' UTR:
no
RNA size:
1154
ORF size:
828 CDS single in intron:
no
Alignment % ID:
99.83
txCdsPredict score:
1694.00 frame shift in genome:
no
% Coverage:
78.77
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.