Human Gene PMS2P1 (uc003uuh.2)
  Description: Homo sapiens postmeiotic segregation increased 2 pseudogene 1 (PMS2P1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr7:99,918,263-99,933,930 Size: 15,668 Total Exon Count: 7 Strand: -


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:99,918,263-99,933,930)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.11 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 257.96 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC110395 - Homo sapiens postmeiotic segregation increased 2-like 1 pseudogene, mRNA (cDNA clone IMAGE:5216781).
BC038996 - Homo sapiens postmeiotic segregation increased 2-like 1, mRNA (cDNA clone IMAGE:6059073), with apparent retained intron.
LP896486 - Sequence 1350 from Patent EP3253886.
JD487137 - Sequence 468161 from Patent EP1572962.
JD299630 - Sequence 280654 from Patent EP1572962.
BC067809 - Homo sapiens postmeiotic segregation increased 2-like 1 pseudogene, mRNA (cDNA clone IMAGE:5284726).
D38435 - Homo sapiens hPMS3 mRNA, partial cds.
D38499 - Homo sapiens PMS3 mRNA (yeast mismatch repair gene PMS1 homologue), partial cds (C-terminal region).
E11276 - Human cDNA encoding mismatch repair-related protein.
AB017004 - Homo sapiens PMS2L13 mRNA, partial cds.
JD525835 - Sequence 506859 from Patent EP1572962.
JD489553 - Sequence 470577 from Patent EP1572962.
JD545788 - Sequence 526812 from Patent EP1572962.
BC044214 - Homo sapiens postmeiotic segregation increased 2-like 1, mRNA (cDNA clone IMAGE:6049115), partial cds.
JD415816 - Sequence 396840 from Patent EP1572962.
JD397410 - Sequence 378434 from Patent EP1572962.
JD143902 - Sequence 124926 from Patent EP1572962.
JD304835 - Sequence 285859 from Patent EP1572962.
DQ595418 - Homo sapiens piRNA piR-61530, complete sequence.
DQ577017 - Homo sapiens piRNA piR-45129, complete sequence.
D38440 - Homo sapiens hPMS8 mRNA, partial cds.
D38503 - Homo sapiens PMS8 mRNA (yeast mismatch repair gene PMS1 homologue), partial cds (C-terminal region).
E11281 - Human cDNA encoding mismatch repair-related protein.
DQ573916 - Homo sapiens piRNA piR-42028, complete sequence.
AB103084 - Homo sapiens PMS2 mRNA for postmeiotic segregation increased 2 nirs variant 3, complete cds.
JD538559 - Sequence 519583 from Patent EP1572962.
JD316586 - Sequence 297610 from Patent EP1572962.
JD215924 - Sequence 196948 from Patent EP1572962.
JD277168 - Sequence 258192 from Patent EP1572962.
JD187252 - Sequence 168276 from Patent EP1572962.
JD038365 - Sequence 19389 from Patent EP1572962.
JD167920 - Sequence 148944 from Patent EP1572962.
JD438004 - Sequence 419028 from Patent EP1572962.
JD142643 - Sequence 123667 from Patent EP1572962.
JD137848 - Sequence 118872 from Patent EP1572962.
JD460644 - Sequence 441668 from Patent EP1572962.
JD516525 - Sequence 497549 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_003613
UCSC ID: uc003uuh.2
RefSeq Accession: NR_003613

-  Gene Model Information
 
category: antisense nonsense-mediated-decay: no RNA accession: NR_003613.1
exon count: 7CDS single in 3' UTR: no RNA size: 1518
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 379.50frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.