Human Gene ZC3HAV1L (uc003vum.1)
Description: Homo sapiens zinc finger CCCH-type, antiviral 1-like (ZC3HAV1L), mRNA.
Transcript (Including UTRs)
Position: hg19 chr7:138,710,452-138,720,775 Size: 10,324 Total Exon Count: 5 Strand: -
Coding Region
Position: hg19 chr7:138,711,290-138,720,763 Size: 9,474 Coding Exon Count: 5
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: ZCCHL_HUMAN
DESCRIPTION: RecName: Full=Zinc finger CCCH-type antiviral protein 1-like;
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.CAUTION: Despite its name, it does not contain a canonical C3H1- type zinc-finger.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
Press "+" in the title bar above to open this section.
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
Press "+" in the title bar above to open this section.
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR026693 - Zc3hav1_like
ModBase Predicted Comparative 3D Structure on Q96H79
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC020784 - Homo sapiens zinc finger CCCH-type, antiviral 1-like, mRNA (cDNA clone IMAGE:4773508), complete cds.HQ257901 - Synthetic construct Homo sapiens clone IMAGE:100072210 Unknown protein gene, encodes complete protein.BC008842 - Homo sapiens zinc finger CCCH-type, antiviral 1-like, mRNA (cDNA clone MGC:14289 IMAGE:4136104), complete cds.LF384093 - JP 2014500723-A/191596: Polycomb-Associated Non-Coding RNAs.JD349631 - Sequence 330655 from Patent EP1572962.JD064309 - Sequence 45333 from Patent EP1572962.JD295441 - Sequence 276465 from Patent EP1572962.JD072020 - Sequence 53044 from Patent EP1572962.JD425918 - Sequence 406942 from Patent EP1572962.JD255809 - Sequence 236833 from Patent EP1572962.JD212264 - Sequence 193288 from Patent EP1572962.JD195475 - Sequence 176499 from Patent EP1572962.JD463282 - Sequence 444306 from Patent EP1572962.JD071444 - Sequence 52468 from Patent EP1572962.JD535553 - Sequence 516577 from Patent EP1572962.JD035116 - Sequence 16140 from Patent EP1572962.JD152351 - Sequence 133375 from Patent EP1572962.JD258829 - Sequence 239853 from Patent EP1572962.JD293365 - Sequence 274389 from Patent EP1572962.JD515278 - Sequence 496302 from Patent EP1572962.JD496306 - Sequence 477330 from Patent EP1572962.JD187566 - Sequence 168590 from Patent EP1572962.JD146915 - Sequence 127939 from Patent EP1572962.JD538774 - Sequence 519798 from Patent EP1572962.JD423448 - Sequence 404472 from Patent EP1572962.JD187655 - Sequence 168679 from Patent EP1572962.JD482381 - Sequence 463405 from Patent EP1572962.JD220684 - Sequence 201708 from Patent EP1572962.JD202604 - Sequence 183628 from Patent EP1572962.JD538955 - Sequence 519979 from Patent EP1572962.JD548613 - Sequence 529637 from Patent EP1572962.LF213027 - JP 2014500723-A/20530: Polycomb-Associated Non-Coding RNAs.LF361745 - JP 2014500723-A/169248: Polycomb-Associated Non-Coding RNAs.JD020167 - Sequence 1191 from Patent EP1572962.MA619670 - JP 2018138019-A/191596: Polycomb-Associated Non-Coding RNAs.MA448604 - JP 2018138019-A/20530: Polycomb-Associated Non-Coding RNAs.MA597322 - JP 2018138019-A/169248: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: C7orf39, NM_080660, NP_542391, Q8WUD9, Q96H79, ZCCHL_HUMANUCSC ID: uc003vum.1RefSeq Accession: NM_080660
Protein: Q96H79
(aka ZCCHL_HUMAN)
CCDS: CCDS5850.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_080660.3
exon count:
5 CDS single in 3' UTR:
no
RNA size:
1802
ORF size:
903 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
2006.00 frame shift in genome:
no
% Coverage:
97.28
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
Click here
for a detailed description of the fields of the table above.
Methods, Credits, and Use Restrictions
Click here
for details on how this gene model was made and data restrictions if any.