Human Gene FASTK (uc003wiz.2)
  Description: Homo sapiens Fas-activated serine/threonine kinase (FASTK), transcript variant 5, mRNA.
RefSeq Summary (NM_001258461): The protein encoded by this gene is a member of the serine/threonine protein kinase family. This kinase was shown to be activated rapidly during Fas-mediated apoptosis in Jurkat cells. In response to Fas receptor ligation, it phosphorylates TIA1, an apoptosis-promoting nuclear RNA-binding protein. The encoded protein is a strong inducer of lymphocyte apoptosis. Two transcript variants encoding different isoforms have been found for this gene. Other variants exist, but their full-length natures have not yet been determined. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr7:150,773,708-150,777,970 Size: 4,263 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg19 chr7:150,773,812-150,777,853 Size: 4,042 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:150,773,708-150,777,970)mRNA (may differ from genome)Protein (522 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCLynxMGIOMIMPubMed
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: F8VTW9_HUMAN
DESCRIPTION: SubName: Full=Fas-activated serine/threonine kinase;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): FASTK
CDC HuGE Published Literature: FASTK

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 56.25 RPKM in Pituitary
Total median expression: 1510.88 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -53.20117-0.455 Picture PostScript Text
3' UTR -33.10104-0.318 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013579 - FAST_2
IPR010622 - FAST_Leu-rich
IPR013584 - RAP
IPR015715 - Ser/Thr_kinase_FAST

Pfam Domains:
PF06743 - FAST kinase-like protein, subdomain 1
PF08368 - FAST kinase-like protein, subdomain 2
PF08373 - RAP domain

ModBase Predicted Comparative 3D Structure on F8VTW9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC000377 - Homo sapiens Fas-activated serine/threonine kinase, mRNA (cDNA clone MGC:8381 IMAGE:2820338), complete cds.
BC006386 - Homo sapiens Fas-activated serine/threonine kinase, mRNA (cDNA clone IMAGE:4110166).
AL713798 - Homo sapiens mRNA; cDNA DKFZp667F1810 (from clone DKFZp667F1810).
AB209783 - Homo sapiens mRNA for Fas-activated serine/threonine kinase isoform 1 variant protein.
X86779 - H.sapiens mRNA for FAST kinase.
AK023141 - Homo sapiens cDNA FLJ13079 fis, clone NT2RP3002004, moderately similar to H.sapiens mRNA for FAST kinase.
AK223132 - Homo sapiens mRNA for Fas-activated serine/threonine kinase isoform 1 variant, clone: KDN01511.
BC011770 - Homo sapiens Fas-activated serine/threonine kinase, mRNA (cDNA clone MGC:19784 IMAGE:3831196), complete cds.
BC039026 - Homo sapiens Fas-activated serine/threonine kinase, mRNA (cDNA clone MGC:47542 IMAGE:4940575), complete cds.
JD221048 - Sequence 202072 from Patent EP1572962.
AK292232 - Homo sapiens cDNA FLJ77586 complete cds, highly similar to Homo sapiens Fas-activated serine/threonine kinase (FASTK), transcript variant 1, mRNA.
KJ893167 - Synthetic construct Homo sapiens clone ccsbBroadEn_02561 FASTK gene, encodes complete protein.
KJ905405 - Synthetic construct Homo sapiens clone ccsbBroadEn_14979 FASTK gene, encodes complete protein.
DQ892922 - Synthetic construct clone IMAGE:100005552; FLH190872.01X; RZPDo839E1176D Fas-activated serine/threonine kinase (FASTK) gene, encodes complete protein.
DQ896171 - Synthetic construct Homo sapiens clone IMAGE:100010631; FLH190868.01L; RZPDo839E1166D Fas-activated serine/threonine kinase (FASTK) gene, encodes complete protein.
EU176731 - Synthetic construct Homo sapiens clone IMAGE:100011647; FLH264009.01L; RZPDo839B12245D Fas-activated serine/threonine kinase (FASTK) gene, encodes complete protein.
AB385070 - Synthetic construct DNA, clone: pF1KB5242, Homo sapiens FASTK gene for Fas-activated serine/threonine kinase, complete cds, without stop codon, in Flexi system.
JD043695 - Sequence 24719 from Patent EP1572962.
JD134479 - Sequence 115503 from Patent EP1572962.
JD218094 - Sequence 199118 from Patent EP1572962.
JD441555 - Sequence 422579 from Patent EP1572962.
JD341897 - Sequence 322921 from Patent EP1572962.
JD157116 - Sequence 138140 from Patent EP1572962.
JD364081 - Sequence 345105 from Patent EP1572962.
JD339159 - Sequence 320183 from Patent EP1572962.
JD231357 - Sequence 212381 from Patent EP1572962.
JD461380 - Sequence 442404 from Patent EP1572962.
JD346179 - Sequence 327203 from Patent EP1572962.
JD129817 - Sequence 110841 from Patent EP1572962.
JD386339 - Sequence 367363 from Patent EP1572962.
JD450420 - Sequence 431444 from Patent EP1572962.
JD158044 - Sequence 139068 from Patent EP1572962.
JD437824 - Sequence 418848 from Patent EP1572962.
JD415754 - Sequence 396778 from Patent EP1572962.
CU680050 - Synthetic construct Homo sapiens gateway clone IMAGE:100017402 5' read FASTK mRNA.

-  Other Names for This Gene
  Alternate Gene Symbols: F8VTW9, F8VTW9_HUMAN, NM_001258461, NP_001245390, uc003wiz.1
UCSC ID: uc003wiz.2
RefSeq Accession: NM_001258461
Protein: F8VTW9 CCDS: CCDS5918.1, CCDS59088.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001258461.1
exon count: 10CDS single in 3' UTR: no RNA size: 1790
ORF size: 1569CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3215.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.