Human Gene LINC01006 (uc003wmm.3)
  Description: Homo sapiens chromosome 7 open reading frame 13 (LINC01006), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr7:156,431,060-156,433,348 Size: 2,289 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr7:156,432,698-156,433,348 Size: 651 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Model InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:156,431,060-156,433,348)mRNA (may differ from genome)Protein (216 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsH-INVHPRD
LynxMGIneXtProtPubMedUniProtKB

-  Comments and Description Text from UniProtKB
  ID: CG013_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein C7orf13;
SUBCELLULAR LOCATION: Membrane; Single-pass membrane protein (Potential).
TISSUE SPECIFICITY: Expressed only in testis.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -536.921638-0.328 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q8NI28
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC031037 - Homo sapiens chromosome 7 open reading frame 13, mRNA (cDNA clone IMAGE:5277941).
AK056371 - Homo sapiens cDNA FLJ31809 fis, clone NT2RI2009281.
AF439977 - Homo sapiens processed retroposon C7orf13 (C7orf13) mRNA, partial cds.
AF063598 - Homo sapiens brain my040 protein mRNA, complete cds.
JD317828 - Sequence 298852 from Patent EP1572962.
JD169000 - Sequence 150024 from Patent EP1572962.
JD310482 - Sequence 291506 from Patent EP1572962.
JD237642 - Sequence 218666 from Patent EP1572962.
JD305562 - Sequence 286586 from Patent EP1572962.
JD457920 - Sequence 438944 from Patent EP1572962.
BC050364 - Homo sapiens chromosome 7 open reading frame 13, mRNA (cDNA clone IMAGE:5747290), partial cds.
BC058889 - Homo sapiens cDNA clone IMAGE:5747267, partial cds.
BC070228 - Homo sapiens chromosome 7 open reading frame 13, mRNA (cDNA clone IMAGE:6558357).
JD270379 - Sequence 251403 from Patent EP1572962.
JD412894 - Sequence 393918 from Patent EP1572962.
KJ901152 - Synthetic construct Homo sapiens clone ccsbBroadEn_10546 C7orf13 gene, encodes complete protein.
DQ578130 - Homo sapiens piRNA piR-46242, complete sequence.
JD462993 - Sequence 444017 from Patent EP1572962.
JD520441 - Sequence 501465 from Patent EP1572962.
JD417074 - Sequence 398098 from Patent EP1572962.
JD398235 - Sequence 379259 from Patent EP1572962.
JD254030 - Sequence 235054 from Patent EP1572962.
JD227963 - Sequence 208987 from Patent EP1572962.
JD164438 - Sequence 145462 from Patent EP1572962.
JD226918 - Sequence 207942 from Patent EP1572962.
JD069260 - Sequence 50284 from Patent EP1572962.
JD150277 - Sequence 131301 from Patent EP1572962.
JD125440 - Sequence 106464 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: C7orf13, CG013_HUMAN, NR_026865, Q8NI28
UCSC ID: uc003wmm.3
RefSeq Accession: NR_026865
Protein: Q8NI28 (aka CG013_HUMAN)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_026865.1
exon count: 1CDS single in 3' UTR: no RNA size: 2299
ORF size: 651CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1357.00frame shift in genome: no % Coverage: 99.56
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.