Human Gene NCAPG2 (uc003wnw.1)
  Description: Homo sapiens non-SMC condensin II complex, subunit G2 (NCAPG2), mRNA.
RefSeq Summary (NM_017760): This gene encodes a protein that belongs to the Condensin2nSMC family of proteins. The encoded protein is a regulatory subunit of the condensin II complex which, along with the condensin I complex, plays a role in chromosome assembly and segregation during mitosis. A similar protein in mouse is required for early development of the embryo. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Aug 2013].
Transcript (Including UTRs)
   Position: hg19 chr7:158,424,003-158,497,520 Size: 73,518 Total Exon Count: 31 Strand: -


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:158,424,003-158,497,520)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkH-INVHGNCLynx
PubMedWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.86 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 89.96 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC028618 - Homo sapiens non-SMC condensin II complex, subunit G2, mRNA (cDNA clone IMAGE:4821510), with apparent retained intron.
BC020560 - Homo sapiens non-SMC condensin II complex, subunit G2, mRNA (cDNA clone MGC:21468 IMAGE:3458938), complete cds.
BC043404 - Homo sapiens non-SMC condensin II complex, subunit G2, mRNA (cDNA clone MGC:50909 IMAGE:6045248), complete cds.
AK023347 - Homo sapiens cDNA FLJ13285 fis, clone OVARC1001129.
AK092008 - Homo sapiens cDNA FLJ34689 fis, clone MESAN2000815, highly similar to Homo sapiens leucine zipper protein 5 (LUZP5), mRNA.
AX747307 - Sequence 832 from Patent EP1308459.
AK000318 - Homo sapiens cDNA FLJ20311 fis, clone HEP07319.
AK022744 - Homo sapiens cDNA FLJ12682 fis, clone NT2RM4002452.
AK315699 - Homo sapiens cDNA, FLJ96798.
EU832468 - Synthetic construct Homo sapiens clone HAIB:100067497; DKFZo008C0529 non-SMC condensin II complex, subunit G2 protein (NCAPG2) gene, encodes complete protein.
EU832548 - Synthetic construct Homo sapiens clone HAIB:100067577; DKFZo004C0530 non-SMC condensin II complex, subunit G2 protein (NCAPG2) gene, encodes complete protein.
BX537845 - Homo sapiens mRNA; cDNA DKFZp686G2253 (from clone DKFZp686G2253); complete cds.
AK301901 - Homo sapiens cDNA FLJ59780 complete cds, highly similar to Homo sapiens leucine zipper protein 5 (LUZP5), mRNA.
BC005878 - Homo sapiens non-SMC condensin II complex, subunit G2, mRNA (cDNA clone IMAGE:3143004), partial cds.
JD021022 - Sequence 2046 from Patent EP1572962.
AK295057 - Homo sapiens cDNA FLJ54675 complete cds, highly similar to Homo sapiens leucine zipper protein 5 (LUZP5), mRNA.
JD025079 - Sequence 6103 from Patent EP1572962.
JD030032 - Sequence 11056 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC028618
UCSC ID: uc003wnw.1
RefSeq Accession: NM_017760

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: BC028618.1
exon count: 31CDS single in 3' UTR: no RNA size: 4172
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1984.50frame shift in genome: no % Coverage: 99.50
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.