Human Gene KCNK9 (uc003yve.1)
  Description: Homo sapiens potassium channel, subfamily K, member 9 (KCNK9), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr8:140,613,082-140,631,342 Size: 18,261 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksPrimersGenetic AssociationsMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA DescriptionsOther NamesGeneReviews
Model InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:140,613,082-140,631,342)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkH-INVHGNCLynx
MalacardsPubMedWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): KCNK9
CDC HuGE Published Literature: KCNK9

-  MalaCards Disease Associations
  MalaCards Gene Search: KCNK9
Diseases sorted by gene-association score: birk-barel mental retardation dysmorphism syndrome* (1699), kcnk9 imprinting syndrome* (400), childhood absence epilepsy (11)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 26.19 RPKM in Brain - Cerebellum
Total median expression: 64.29 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF205129 - JP 2014500723-A/12632: Polycomb-Associated Non-Coding RNAs.
AF257080 - Homo sapiens two pore potassium channel KT3.2 mRNA, complete cds.
BC112063 - Homo sapiens potassium channel, subfamily K, member 9, mRNA (cDNA clone MGC:138268 IMAGE:8327531), complete cds.
BC112065 - Homo sapiens potassium channel, subfamily K, member 9, mRNA (cDNA clone MGC:138270 IMAGE:8327533), complete cds.
BC075079 - Homo sapiens potassium channel, subfamily K, member 9, mRNA (cDNA clone MGC:104140 IMAGE:30915596), complete cds.
BC075080 - Homo sapiens potassium channel, subfamily K, member 9, mRNA (cDNA clone MGC:103976 IMAGE:30915383), complete cds.
AF248241 - Homo sapiens 2P domain potassium channel mRNA, complete cds.
AF212829 - Homo sapiens potassium channel TASK3 (KCNK9) mRNA, complete cds.
AF279809 - Homo sapiens 2P domain potassium channel Task-3 (KCNK9) mRNA, complete cds.
AY190605 - Homo sapiens breast cancer amplified potassium channel (KCNK9) mRNA, complete cds.
KJ893883 - Synthetic construct Homo sapiens clone ccsbBroadEn_03277 KCNK9 gene, encodes complete protein.
KR712141 - Synthetic construct Homo sapiens clone CCSBHm_00036105 KCNK9 (KCNK9) mRNA, encodes complete protein.
MA440706 - JP 2018138019-A/12632: Polycomb-Associated Non-Coding RNAs.
AK094401 - Homo sapiens cDNA FLJ37082 fis, clone BRACE2016465.
AK090707 - Homo sapiens cDNA FLJ33388 fis, clone BRACE2006783.
BC034734 - Homo sapiens, clone IMAGE:5197118, mRNA.
AK095204 - Homo sapiens cDNA FLJ37885 fis, clone BRTHA1000021.

-  Other Names for This Gene
  Alternate Gene Symbols: BC034734, NM_016601
UCSC ID: uc003yve.1
RefSeq Accession: NM_016601

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene KCNK9:
kcnk9-is (KCNK9 Imprinting Syndrome)

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: BC034734.1
exon count: 3CDS single in 3' UTR: no RNA size: 2204
ORF size: 0CDS single in intron: no Alignment % ID: 99.95
txCdsPredict score: 1246.00frame shift in genome: no % Coverage: 96.64
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.