Human Gene C8orf82 (uc003zdq.1)
  Description: Homo sapiens chromosome 8 open reading frame 82 (C8orf82), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr8:145,751,603-145,754,458 Size: 2,856 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr8:145,752,726-145,753,352 Size: 627 Coding Exon Count: 1 

Page IndexSequence and LinksPrimersGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:145,751,603-145,754,458)mRNA (may differ from genome)Protein (208 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsGeneNetworkHGNC
LynxMGIPubMedTreefamUniProtKB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 12.55 RPKM in Bladder
Total median expression: 339.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -215.14418-0.515 Picture PostScript Text
3' UTR -580.701123-0.517 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF14956 - Domain of unknown function (DUF4505)

ModBase Predicted Comparative 3D Structure on Q6P1X6-2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  BC111067 - Homo sapiens leucine rich repeat containing 24, mRNA (cDNA clone MGC:111484 IMAGE:5767723), complete cds.
BC064829 - Homo sapiens chromosome 8 open reading frame 82, mRNA (cDNA clone MGC:70832 IMAGE:6176032), complete cds.
BC064373 - Homo sapiens chromosome 8 open reading frame 82, mRNA (cDNA clone MGC:70857 IMAGE:5722862), complete cds.
BC073936 - Homo sapiens chromosome 8 open reading frame 82, mRNA (cDNA clone MGC:90446 IMAGE:5223300), complete cds.
JD447842 - Sequence 428866 from Patent EP1572962.
JD108886 - Sequence 89910 from Patent EP1572962.
JD116654 - Sequence 97678 from Patent EP1572962.
JD409163 - Sequence 390187 from Patent EP1572962.
JD138856 - Sequence 119880 from Patent EP1572962.
JD127958 - Sequence 108982 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC073936, Q6P1X6-2
UCSC ID: uc003zdq.1
RefSeq Accession: NM_001001795
Protein: Q6P1X6-2, splice isoform of Q6P1X6

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC073936.1
exon count: 2CDS single in 3' UTR: no RNA size: 2240
ORF size: 627CDS single in intron: no Alignment % ID: 99.86
txCdsPredict score: 1193.00frame shift in genome: no % Coverage: 96.79
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 1805# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.