Human Gene ZNF252P-AS1 (uc003zfb.4)
  Description: Homo sapiens ZNF252P antisense RNA 1 (ZNF252P-AS1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr8:146,228,197-146,231,432 Size: 3,236 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg19 chr8:146,228,373-146,229,008 Size: 636 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA Structure
Protein StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:146,228,197-146,231,432)mRNA (may differ from genome)Protein (211 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblExonPrimerGeneCardsH-INVHGNCLynx
MGIneXtProtPubMedUniProtKB

-  Comments and Description Text from UniProtKB
  ID: ZNFS1_HUMAN
DESCRIPTION: RecName: Full=Putative uncharacterized protein ZNF252P-AS1; AltName: Full=ZNF252P antisense RNA 1; AltName: Full=ZNF252P antisense gene protein 1;
CAUTION: Product of a dubious gene prediction.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -61.80176-0.351 Picture PostScript Text
3' UTR -751.832424-0.310 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q0IIN9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC046439 - Homo sapiens cDNA clone IMAGE:4828056.
BC122544 - Homo sapiens chromosome 8 open reading frame 77, mRNA (cDNA clone IMAGE:40084495).
JD129642 - Sequence 110666 from Patent EP1572962.
AK092777 - Homo sapiens cDNA FLJ35458 fis, clone SMINT2004729.
AX747724 - Sequence 1249 from Patent EP1308459.
AB527937 - Synthetic construct DNA, clone: pF1KB0975, Homo sapiens C8orf77 gene for Uncharacterized protein C8orf77, without stop codon, in Flexi system.
KJ900958 - Synthetic construct Homo sapiens clone ccsbBroadEn_10352 C8orf77 gene, encodes complete protein.
JD565229 - Sequence 546253 from Patent EP1572962.
JD547623 - Sequence 528647 from Patent EP1572962.
JD227600 - Sequence 208624 from Patent EP1572962.
JD405609 - Sequence 386633 from Patent EP1572962.
JD457364 - Sequence 438388 from Patent EP1572962.
JD388766 - Sequence 369790 from Patent EP1572962.
JD070638 - Sequence 51662 from Patent EP1572962.
JD485634 - Sequence 466658 from Patent EP1572962.
JD484925 - Sequence 465949 from Patent EP1572962.
JD525727 - Sequence 506751 from Patent EP1572962.
JD150032 - Sequence 131056 from Patent EP1572962.
JD525352 - Sequence 506376 from Patent EP1572962.
JD477997 - Sequence 459021 from Patent EP1572962.
JD314656 - Sequence 295680 from Patent EP1572962.
JD070331 - Sequence 51355 from Patent EP1572962.
JD398254 - Sequence 379278 from Patent EP1572962.
JD225014 - Sequence 206038 from Patent EP1572962.
JD254858 - Sequence 235882 from Patent EP1572962.
JD312114 - Sequence 293138 from Patent EP1572962.
JD312113 - Sequence 293137 from Patent EP1572962.
JD346595 - Sequence 327619 from Patent EP1572962.
JD346594 - Sequence 327618 from Patent EP1572962.
JD506245 - Sequence 487269 from Patent EP1572962.
JD089404 - Sequence 70428 from Patent EP1572962.
JD468488 - Sequence 449512 from Patent EP1572962.
JD165980 - Sequence 147004 from Patent EP1572962.
JD206521 - Sequence 187545 from Patent EP1572962.
JD277939 - Sequence 258963 from Patent EP1572962.
JD558107 - Sequence 539131 from Patent EP1572962.
JD265476 - Sequence 246500 from Patent EP1572962.
JD174859 - Sequence 155883 from Patent EP1572962.
JD255381 - Sequence 236405 from Patent EP1572962.
JD055004 - Sequence 36028 from Patent EP1572962.
JD433621 - Sequence 414645 from Patent EP1572962.
JD157678 - Sequence 138702 from Patent EP1572962.
JD227707 - Sequence 208731 from Patent EP1572962.
JD549505 - Sequence 530529 from Patent EP1572962.
JD167146 - Sequence 148170 from Patent EP1572962.
JD272186 - Sequence 253210 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: C8orf77, NR_026974, Q0IIN9, Q8NAE8, ZNFS1_HUMAN
UCSC ID: uc003zfb.4
RefSeq Accession: NR_026974
Protein: Q0IIN9 (aka ZNFS1_HUMAN)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_026974.1
exon count: 1CDS single in 3' UTR: no RNA size: 3250
ORF size: 636CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 736.00frame shift in genome: no % Coverage: 99.57
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.