Human Gene CBWD1 (uc003zgc.4)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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Comparative Toxicogenomics Database (CTD)
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The following chemicals interact with this gene
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Common Gene Haplotype Alleles
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Press "+" in the title bar above to open this section.
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
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The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
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Protein Domain and Structure Information
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Pfam Domains: PF02492 - CobW/HypB/UreG, nucleotide-binding domain
PF07683 - Cobalamin synthesis protein cobW C-terminal domain
SCOP Domains: 52540 - P-loop containing nucleoside triphosphate hydrolases
90002 - Hypothetical protein YjiA, C-terminal domain
ModBase Predicted Comparative 3D Structure on Q9BRT8-3
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
Gene Details | | | | | |
Gene Sorter | | | | | |
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Descriptions from all associated GenBank mRNAs
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AF257330 - Homo sapiens dopamine-responsive protein mRNA, complete cds. AY343911 - Homo sapiens COBW domain containing protein 1 (CBWD1) mRNA, complete cds. AK290648 - Homo sapiens cDNA FLJ75442 complete cds, highly similar to Homo sapiens COBW domain containing 1, mRNA. BC132759 - Homo sapiens COBW domain containing 1, mRNA (cDNA clone MGC:164390 IMAGE:40146781), complete cds. AF212253 - Homo sapiens HCOBP mRNA, complete cds. BC013432 - Homo sapiens COBW domain containing 1, mRNA (cDNA clone MGC:14814 IMAGE:4133722), complete cds. BC009573 - Homo sapiens COBW domain containing 1, mRNA (cDNA clone MGC:14547 IMAGE:4133536), complete cds. AK315855 - Homo sapiens cDNA, FLJ79504 complete cds, highly similar to COBW domain-containing protein 1. BC005996 - Homo sapiens COBW domain containing 1, mRNA (cDNA clone MGC:14800 IMAGE:4069589), complete cds. BC037212 - Homo sapiens COBW domain containing 1, mRNA (cDNA clone IMAGE:4838356), with apparent retained intron. HQ447613 - Synthetic construct Homo sapiens clone IMAGE:100070959; CCSB013253_01 COBW domain containing 1 (CBWD1) gene, encodes complete protein. KJ899209 - Synthetic construct Homo sapiens clone ccsbBroadEn_08603 CBWD1 gene, encodes complete protein. JF432127 - Synthetic construct Homo sapiens clone IMAGE:100073266 COBW domain containing 1 (CBWD1) gene, encodes complete protein. KJ894280 - Synthetic construct Homo sapiens clone ccsbBroadEn_03674 CBWD1 gene, encodes complete protein. HQ258394 - Synthetic construct Homo sapiens clone IMAGE:100072823 COBW domain containing 1 (CBWD1) gene, encodes complete protein. KJ899210 - Synthetic construct Homo sapiens clone ccsbBroadEn_08604 CBWD1 gene, encodes complete protein. AK297292 - Homo sapiens cDNA FLJ50730 complete cds, highly similar to COBW domain-containing protein 1. CU679405 - Synthetic construct Homo sapiens gateway clone IMAGE:100022199 5' read CBWD1 mRNA. JD566734 - Sequence 547758 from Patent EP1572962. CU675219 - Synthetic construct Homo sapiens gateway clone IMAGE:100019222 5' read CBWD1 mRNA. AY295766 - Homo sapiens COBW protein-like mRNA, partial sequence. AY320414 - Homo sapiens nasopharyngeal carcinoma-associated antigen NPC-A-6 mRNA, complete cds.
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Other Names for This Gene
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Gene Model Information
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category:
| coding
| nonsense-mediated-decay:
| no
| RNA accession:
| NM_001145356.1
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exon count:
| 14 | CDS single in 3' UTR:
| no
| RNA size:
| 1683 |
ORF size:
| 1131 | CDS single in intron:
| no
| Alignment % ID:
| 100.00 |
txCdsPredict score:
| 2462.00 | frame shift in genome:
| no
| % Coverage:
| 98.99 |
has start codon:
| yes
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| yes
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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