Human Gene DOCK8-AS1 (uc003zge.4) |
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 Sequence and Links to Tools and Databases
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Primer design for this transcript
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 Common Gene Haplotype Alleles
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Press "+" in the title bar above to open this section.
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mRNA Secondary Structure of 3' and 5' UTRs
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The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
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Protein Domain and Structure Information
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ModBase Predicted Comparative 3D Structure on Q5T8R8
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
| Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
| No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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AK055720 - Homo sapiens cDNA FLJ31158 fis, clone KIDNE1000008.
JD060346 - Sequence 41370 from Patent EP1572962.
JD497633 - Sequence 478657 from Patent EP1572962.
JD194262 - Sequence 175286 from Patent EP1572962.
JD149294 - Sequence 130318 from Patent EP1572962.
JD332561 - Sequence 313585 from Patent EP1572962.
JD176014 - Sequence 157038 from Patent EP1572962.
JD073052 - Sequence 54076 from Patent EP1572962.
JD444767 - Sequence 425791 from Patent EP1572962.
JD452302 - Sequence 433326 from Patent EP1572962.
JD139906 - Sequence 120930 from Patent EP1572962.
JD076503 - Sequence 57527 from Patent EP1572962.
JD349711 - Sequence 330735 from Patent EP1572962.
JD297187 - Sequence 278211 from Patent EP1572962.
BC111423 - Homo sapiens chromosome 9 open reading frame 66, mRNA (cDNA clone IMAGE:40032021), complete cds.
JD046899 - Sequence 27923 from Patent EP1572962.
JD533968 - Sequence 514992 from Patent EP1572962.
JD408019 - Sequence 389043 from Patent EP1572962.
JD526491 - Sequence 507515 from Patent EP1572962.
JD048085 - Sequence 29109 from Patent EP1572962.
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Other Names for This Gene
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Alternate Gene Symbols: C9orf66, CI066_HUMAN, NM_152569, NP_689782, Q5T8R8, Q96NB0
UCSC ID: uc003zge.4
RefSeq Accession: NM_152569
Protein: Q5T8R8
(aka CI066_HUMAN)
CCDS: CCDS6439.1
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Gene Model Information
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| category:
| coding
| nonsense-mediated-decay:
| no
| RNA accession:
| NM_152569.2
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| exon count:
| 1 | CDS single in 3' UTR:
| no
| RNA size:
| 2786 |
| ORF size:
| 888 | CDS single in intron:
| no
| Alignment % ID:
| 100.00 |
| txCdsPredict score:
| 1262.00 | frame shift in genome:
| no
| % Coverage:
| 100.00 |
| has start codon:
| yes
| stop codon in genome:
| no
| # of Alignments:
| 1 |
| has end codon:
| yes
| retained intron:
| no
| # AT/AC introns
| 0 |
| selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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US Server
