Human Gene FAM120AOS (uc004att.4)
  Description: Homo sapiens family with sequence similarity 120A opposite strand (FAM120AOS), mRNA.
RefSeq Summary (NM_198841): Differences in the expression level of this gene are associated with the survival rate of those with glioma. [provided by RefSeq, May 2017].
Transcript (Including UTRs)
   Position: hg19 chr9:96,208,782-96,215,539 Size: 6,758 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:96,208,782-96,215,539)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerGeneNetworkH-INVHGNCLynxPubMed
Treefam

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 34.79 RPKM in Pituitary
Total median expression: 863.50 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC080634 - Homo sapiens chromosome 9 open reading frame 10 opposite strand, mRNA (cDNA clone IMAGE:6563304).
BC037551 - Homo sapiens chromosome 9 open reading frame 10 opposite strand, mRNA (cDNA clone IMAGE:5214118), partial cds.
BC063650 - Homo sapiens chromosome 9 open reading frame 10 opposite strand, mRNA (cDNA clone IMAGE:4803436).
BC038803 - Homo sapiens chromosome 9 open reading frame 10 opposite strand, mRNA (cDNA clone IMAGE:5526893), partial cds.
BC046183 - Homo sapiens chromosome 9 open reading frame 10 opposite strand, mRNA (cDNA clone IMAGE:5226128), partial cds.
AK056096 - Homo sapiens cDNA FLJ31534 fis, clone NT2RI2000671.
JD082921 - Sequence 63945 from Patent EP1572962.
JD512256 - Sequence 493280 from Patent EP1572962.
JD309752 - Sequence 290776 from Patent EP1572962.
JD412389 - Sequence 393413 from Patent EP1572962.
JD098177 - Sequence 79201 from Patent EP1572962.
JD506673 - Sequence 487697 from Patent EP1572962.
JD040892 - Sequence 21916 from Patent EP1572962.
BC107135 - Homo sapiens cDNA clone IMAGE:40025893.
BC107136 - Homo sapiens cDNA clone IMAGE:40025901.
BC113074 - Homo sapiens cDNA clone IMAGE:40025891.
JD039622 - Sequence 20646 from Patent EP1572962.
JD133967 - Sequence 114991 from Patent EP1572962.
DQ600084 - Homo sapiens piRNA piR-38150, complete sequence.
JD516268 - Sequence 497292 from Patent EP1572962.
JD130956 - Sequence 111980 from Patent EP1572962.
JD316737 - Sequence 297761 from Patent EP1572962.
JD095217 - Sequence 76241 from Patent EP1572962.
JD241287 - Sequence 222311 from Patent EP1572962.
JD391127 - Sequence 372151 from Patent EP1572962.
JD316057 - Sequence 297081 from Patent EP1572962.
AK309269 - Homo sapiens cDNA, FLJ99310.
JD386149 - Sequence 367173 from Patent EP1572962.
BC160143 - Synthetic construct Homo sapiens clone IMAGE:100064175, MGC:193258 family with sequence similarity 120A opposite strand (FAM120AOS) mRNA, encodes complete protein.
DQ584644 - Homo sapiens piRNA piR-51756, complete sequence.
DQ599685 - Homo sapiens piRNA piR-37751, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: BC113074
UCSC ID: uc004att.4
RefSeq Accession: NM_198841

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: BC113074.1
exon count: 3CDS single in 3' UTR: no RNA size: 1432
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 350.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.