Human Gene MSANTD3 (uc004bax.3)
  Description: Homo sapiens Myb/SANT-like DNA-binding domain containing 3 (MSANTD3), transcript variant 4, mRNA.
RefSeq Summary (NM_001198812): This locus represents naturally occurring read-through transcription from the neighboring MSANTD3 (Myb/SANT-like DNA-binding domain containing 3) and TMEFF1 (transmembrane protein with EGF-like and two follistatin-like domains 1) genes. The read-through transcript encodes a fusion protein that shares sequence identity with the products of each individual gene. [provided by RefSeq, Aug 2013]. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments.
Transcript (Including UTRs)
   Position: hg19 chr9:103,204,188-103,214,016 Size: 9,829 Total Exon Count: 3 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:103,204,188-103,214,016)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblEntrez GeneExonPrimerH-INVHGNC
LynxPubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.26 RPKM in Cells - Cultured fibroblasts
Total median expression: 161.20 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AL831919 - Homo sapiens mRNA; cDNA DKFZp761G1118 (from clone DKFZp761G1118).
AK314924 - Homo sapiens cDNA, FLJ95833.
BC008993 - Homo sapiens chromosome 9 open reading frame 30, mRNA (cDNA clone MGC:17337 IMAGE:4213591), complete cds.
KJ899918 - Synthetic construct Homo sapiens clone ccsbBroadEn_09312 C9orf30 gene, encodes complete protein.
AY598327 - Homo sapiens L8 mRNA, complete cds.
AK092292 - Homo sapiens cDNA FLJ34973 fis, clone NTONG2005497.
JD130565 - Sequence 111589 from Patent EP1572962.
JD026300 - Sequence 7324 from Patent EP1572962.
JD033022 - Sequence 14046 from Patent EP1572962.
JD034213 - Sequence 15237 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK092292, NM_001198812
UCSC ID: uc004bax.3
RefSeq Accession: NM_001198812

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: AK092292.1
exon count: 3CDS single in 3' UTR: no RNA size: 1991
ORF size: 0CDS single in intron: no Alignment % ID: 99.75
txCdsPredict score: 694.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.