To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): PCDH11X CDC HuGE Published Literature: PCDH11X Positive Disease Associations: Alzheimer's disease Related Studies:
Alzheimer's disease Minerva M Carrasquillo , et al. Nature genetics 2009 41(2):192-8, Genetic variation in PCDH11X is associated with susceptibility to late-onset Alzheimer's disease., Nature genetics 2009 41(2):192-8.
[PubMed 19136949]
Alzheimer's disease Carrasquillo ,et al. 2009, Genetic variation in PCDH11X is associated with susceptibility to late-onset Alzheimer's disease, Nature genetics 2009 41- 2 : 192-8.
[PubMed 19136949]
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
ModBase Predicted Comparative 3D Structure on Q9BZA7-2
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse
Rat
Zebrafish
D. melanogaster
C. elegans
S. cerevisiae
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
Descriptions from all associated GenBank mRNAs
LP896569 - Sequence 1433 from Patent EP3253886. AF332218 - Homo sapiens chromosome X protocadherin 11 (PCDH11) mRNA, complete cds, alternatively spliced. AF332219 - Homo sapiens chromosome X protocadherin 11 (PCDH11) mRNA, complete cds, alternatively spliced. BC167817 - Synthetic construct Homo sapiens clone IMAGE:100068207, MGC:195824 protocadherin 11 X-linked (PCDH11X) mRNA, encodes complete protein. AF206516 - Homo sapiens protocadherin-S mRNA, complete cds. AF217288 - Homo sapiens protocadherin-S mRNA, complete cds, alternatively spliced. AY861432 - Homo sapiens protocadherin 11X isoform 8 (PCDH11X) mRNA, complete cds, alternatively spliced. AY861433 - Homo sapiens protocadherin 11X isoform 7 (PCDH11X) mRNA, complete cds, alternatively spliced. AY861434 - Homo sapiens protocadherin 11X isoform 6 (PCDH11X) mRNA, complete cds, alternatively spliced. AY861435 - Homo sapiens protocadherin 11X isoform 5 (PCDH11X) mRNA, partial cds, alternatively spliced. AB037747 - Homo sapiens mRNA for KIAA1326 protein, partial cds. AJ276804 - Homo sapiens mRNA for protocadherin (PCDHX gene). AK299813 - Homo sapiens cDNA FLJ56943 partial cds, highly similar to Protocadherin-11 X-linked precursor. AK316263 - Homo sapiens cDNA, FLJ79162 partial cds, highly similar to Protocadherin-11 X-linked precursor. AK299638 - Homo sapiens cDNA FLJ61367 complete cds, highly similar to Protocadherin-11 X-linked precursor. AB026187 - Homo sapiens PCDH-X mRNA for protocadherin-Xa, complete cds. JD391464 - Sequence 372488 from Patent EP1572962. AJ564847 - Homo sapiens 5'UTR for PCDHX gene, exon 1. JD245626 - Sequence 226650 from Patent EP1572962. JD453783 - Sequence 434807 from Patent EP1572962. JD369948 - Sequence 350972 from Patent EP1572962. JD306766 - Sequence 287790 from Patent EP1572962. JD479931 - Sequence 460955 from Patent EP1572962. AJ564855 - Homo sapiens 5'UTR for PCDHX gene, exon 2. JD056317 - Sequence 37341 from Patent EP1572962. JD479589 - Sequence 460613 from Patent EP1572962. AJ564856 - Homo sapiens 5'UTR for PCDHX gene, exon 3. AJ564932 - Homo sapiens mRNA for protocadherin (PCDHX gene), exon 4.1. AJ564931 - Homo sapiens mRNA for protocadherin (PCDHX gene), exon 4. AJ564935 - Homo sapiens mRNA for protocadherin (PCDHX gene), exon 5.2. AJ564936 - Homo sapiens mRNA for protocadherin (PCDHX gene), exon 5.3. AJ564933 - Homo sapiens mRNA for protocadherin (PCDHX gene), exon 5. AJ564934 - Homo sapiens mRNA for protocadherin (PCDHX gene), exon 5.1. U79247 - Human clone 23599 mRNA sequence. AB026188 - Homo sapiens PCDH-X mRNA for protocadherin-Xb, partial cds. AJ564937 - Homo sapiens mRNA for protocadherin (PCDHX gene), exon 6. JD146027 - Sequence 127051 from Patent EP1572962. JD088788 - Sequence 69812 from Patent EP1572962. JD148401 - Sequence 129425 from Patent EP1572962. JD153732 - Sequence 134756 from Patent EP1572962. JD498965 - Sequence 479989 from Patent EP1572962. JD357242 - Sequence 338266 from Patent EP1572962. JD551287 - Sequence 532311 from Patent EP1572962. JD240955 - Sequence 221979 from Patent EP1572962. JD257009 - Sequence 238033 from Patent EP1572962. JD421450 - Sequence 402474 from Patent EP1572962. JD179068 - Sequence 160092 from Patent EP1572962. JD440718 - Sequence 421742 from Patent EP1572962. JD063001 - Sequence 44025 from Patent EP1572962. JD444809 - Sequence 425833 from Patent EP1572962. JD073076 - Sequence 54100 from Patent EP1572962. JD073075 - Sequence 54099 from Patent EP1572962. JD344711 - Sequence 325735 from Patent EP1572962. JD443412 - Sequence 424436 from Patent EP1572962. JD138361 - Sequence 119385 from Patent EP1572962. JD138362 - Sequence 119386 from Patent EP1572962. JD176190 - Sequence 157214 from Patent EP1572962. JD176191 - Sequence 157215 from Patent EP1572962. JD531720 - Sequence 512744 from Patent EP1572962. JD176192 - Sequence 157216 from Patent EP1572962. JD499575 - Sequence 480599 from Patent EP1572962.