Human Gene GPRASP2 (uc004ejm.3)
  Description: Homo sapiens G protein-coupled receptor associated sorting protein 2 (GPRASP2), transcript variant 2, mRNA.
RefSeq Summary (NM_138437): The protein encoded by this gene is a member of a family that regulates the activity of G protein-coupled receptors (GPCRs). The encoded protein has been shown to be capable of interacting with several GPCRs, including the M1 muscarinic acetylcholine receptor and the calcitonin receptor. Several transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, May 2010].
Transcript (Including UTRs)
   Position: hg19 chrX:101,967,104-101,972,661 Size: 5,558 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chrX:101,969,798-101,972,314 Size: 2,517 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:101,967,104-101,972,661)mRNA (may differ from genome)Protein (838 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GASP2_HUMAN
DESCRIPTION: RecName: Full=G-protein coupled receptor-associated sorting protein 2; Short=GASP-2;
FUNCTION: May play a role in regulation of a variety of G-protein coupled receptors.
SUBUNIT: Interacts with cytoplasmic tails of a variety of G- protein coupled receptors such as muscarinic acetylcholine receptor M1/CHRM1 and calcitonin receptor/CALCR.
TISSUE SPECIFICITY: Expressed in the brain.
SIMILARITY: Belongs to the GPRASP family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: GPRASP2
Diseases sorted by gene-association score: autism spectrum disorder (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.36 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 319.63 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -346.35856-0.405 Picture PostScript Text
3' UTR -76.00347-0.219 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR006911 - ARM-rpt_dom
IPR016024 - ARM-type_fold

Pfam Domains:
PF04826 - Armadillo-like

SCOP Domains:
48371 - ARM repeat

ModBase Predicted Comparative 3D Structure on Q96D09
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001540 beta-amyloid binding
GO:0005515 protein binding

Cellular Component:
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK123832 - Homo sapiens cDNA FLJ41838 fis, clone NT2RI3001515, highly similar to G-protein coupled receptor-associated sorting protein 2.
BC051707 - Homo sapiens G protein-coupled receptor associated sorting protein 2, mRNA (cDNA clone IMAGE:5271751).
BC036772 - Homo sapiens G protein-coupled receptor associated sorting protein 2, mRNA (cDNA clone MGC:46095 IMAGE:5723418), complete cds.
JD328525 - Sequence 309549 from Patent EP1572962.
AK096067 - Homo sapiens cDNA FLJ38748 fis, clone KIDNE2012440.
JD174430 - Sequence 155454 from Patent EP1572962.
JD266230 - Sequence 247254 from Patent EP1572962.
BC013576 - Homo sapiens G protein-coupled receptor associated sorting protein 2, mRNA (cDNA clone MGC:9231 IMAGE:3893954), complete cds.
JD325510 - Sequence 306534 from Patent EP1572962.
JD153803 - Sequence 134827 from Patent EP1572962.
AM393617 - Synthetic construct Homo sapiens clone IMAGE:100002587 for hypothetical protein (GPRASP2 gene).
AB463047 - Synthetic construct DNA, clone: pF1KB8632, Homo sapiens GPRASP2 gene for G protein-coupled receptor associated sorting protein 2, without stop codon, in Flexi system.
CU680622 - Synthetic construct Homo sapiens gateway clone IMAGE:100017499 5' read GPRASP2 mRNA.
KJ895275 - Synthetic construct Homo sapiens clone ccsbBroadEn_04669 GPRASP2 gene, encodes complete protein.
AL832187 - Homo sapiens mRNA; cDNA DKFZp686M0420 (from clone DKFZp686M0420).
AK094646 - Homo sapiens cDNA FLJ37327 fis, clone BRAMY2018467.
AK092981 - Homo sapiens cDNA FLJ35662 fis, clone SPLEN2017613.
AX747837 - Sequence 1362 from Patent EP1308459.
JD180370 - Sequence 161394 from Patent EP1572962.
JD489639 - Sequence 470663 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: D3DXA0, GASP2_HUMAN, NM_138437, NP_001186747, Q8NAB4, Q96D09
UCSC ID: uc004ejm.3
RefSeq Accession: NM_138437
Protein: Q96D09 (aka GASP2_HUMAN)
CCDS: CCDS14501.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_138437.5
exon count: 4CDS single in 3' UTR: no RNA size: 3730
ORF size: 2517CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 5018.00frame shift in genome: no % Coverage: 99.73
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.