Human Gene PABIR2 (uc004exq.3)
Description: Homo sapiens family with sequence similarity 122B (PABIR2), transcript variant 4, mRNA.
Transcript (Including UTRs)
Position: hg19 chrX:133,903,596-133,930,385 Size: 26,790 Total Exon Count: 10 Strand: -
Coding Region
Position: hg19 chrX:133,906,169-133,930,235 Size: 24,067 Coding Exon Count: 10
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
ModBase Predicted Comparative 3D Structure on Q7Z309-3
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
BX538218 - Homo sapiens mRNA; cDNA DKFZp686L20116 (from clone DKFZp686L20116); complete cds.AK124940 - Homo sapiens cDNA FLJ42950 fis, clone BRSTN2007284.AL832218 - Homo sapiens mRNA; cDNA DKFZp686E0936 (from clone DKFZp686E0936).AK026809 - Homo sapiens cDNA: FLJ23156 fis, clone LNG09609.AK125991 - Homo sapiens cDNA FLJ44003 fis, clone TESTI4022936.AK124650 - Homo sapiens cDNA FLJ42659 fis, clone BRAMY2003008.JD526898 - Sequence 507922 from Patent EP1572962.AK297720 - Homo sapiens cDNA FLJ57750 complete cds.AB541015 - Homo sapiens SPACIA2 mRNA for synoviocyte proliferation associated in collagen-induced arthritis 2, isoform 2, complete cds.AK292517 - Homo sapiens cDNA FLJ76450 complete cds.BC019221 - Homo sapiens family with sequence similarity 122B, mRNA (cDNA clone MGC:11157 IMAGE:3841054), complete cds.BC032419 - Homo sapiens family with sequence similarity 122B, mRNA (cDNA clone IMAGE:5222139), complete cds.JD086629 - Sequence 67653 from Patent EP1572962.JD244440 - Sequence 225464 from Patent EP1572962.JD563654 - Sequence 544678 from Patent EP1572962.JD299243 - Sequence 280267 from Patent EP1572962.AB541014 - Homo sapiens SPACIA2 mRNA for synoviocyte proliferation associated in collagen-induced arthritis 2, isoform 1, complete cds.CU676388 - Synthetic construct Homo sapiens gateway clone IMAGE:100021816 5' read FAM122B mRNA.AM393279 - Synthetic construct Homo sapiens clone IMAGE:100002156 for hypothetical protein (FAM122B gene).KJ895706 - Synthetic construct Homo sapiens clone ccsbBroadEn_05100 FAM122B gene, encodes complete protein.AB528130 - Synthetic construct DNA, clone: pF1KE0166, Homo sapiens FAM122B gene for family with sequence similarity 122B, without stop codon, in Flexi system.JD185615 - Sequence 166639 from Patent EP1572962.JD176860 - Sequence 157884 from Patent EP1572962.JD294293 - Sequence 275317 from Patent EP1572962.JD226383 - Sequence 207407 from Patent EP1572962.JD405707 - Sequence 386731 from Patent EP1572962.
Other Names for This Gene
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001170756.1
exon count:
10 CDS single in 3' UTR:
no
RNA size:
3534
ORF size:
801 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
1740.00 frame shift in genome:
no
% Coverage:
99.72
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
yes
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
1877 # strange splices:
0
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Methods, Credits, and Use Restrictions
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