Human Gene MOSPD1 (uc004eya.3)
  Description: Homo sapiens motile sperm domain containing 1 (MOSPD1), mRNA.
Transcript (Including UTRs)
   Position: hg19 chrX:134,021,662-134,033,564 Size: 11,903 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chrX:134,023,191-134,033,463 Size: 10,273 Coding Exon Count: 4 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:134,021,662-134,033,564)mRNA (may differ from genome)Protein (159 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsGeneNetwork
H-INVHGNCLynxMalacardsMGIPubMed
TreefamUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MOSPD1
Diseases sorted by gene-association score: conotruncal heart malformations (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.85 RPKM in Adrenal Gland
Total median expression: 177.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -20.40101-0.202 Picture PostScript Text
3' UTR -367.891529-0.241 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF00635 - MSP (Major sperm protein) domain

SCOP Domains:
49354 - PapD-like

ModBase Predicted Comparative 3D Structure on Q9UJG1-2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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-  Descriptions from all associated GenBank mRNAs
  BC005700 - Homo sapiens motile sperm domain containing 1, mRNA (cDNA clone MGC:4987 IMAGE:3450155), complete cds.
AL137163 - Novel human gene mapping to chomosome X.
JD362607 - Sequence 343631 from Patent EP1572962.
JD540896 - Sequence 521920 from Patent EP1572962.
JD224336 - Sequence 205360 from Patent EP1572962.
JD046609 - Sequence 27633 from Patent EP1572962.
JD375389 - Sequence 356413 from Patent EP1572962.
JD155204 - Sequence 136228 from Patent EP1572962.
JD154028 - Sequence 135052 from Patent EP1572962.
JD239372 - Sequence 220396 from Patent EP1572962.
JD390268 - Sequence 371292 from Patent EP1572962.
JD410647 - Sequence 391671 from Patent EP1572962.
JD320461 - Sequence 301485 from Patent EP1572962.
AK299172 - Homo sapiens cDNA FLJ60824 complete cds, highly similar to Motile sperm domain-containing protein 1.
AK307196 - Homo sapiens cDNA, FLJ97144.
JD172092 - Sequence 153116 from Patent EP1572962.
JD087755 - Sequence 68779 from Patent EP1572962.
DQ323992 - Homo sapiens MOSPD1 mRNA, complete cds, alternatively spliced.
AK316570 - Homo sapiens cDNA, FLJ93634, Homo sapiens motile sperm domain containing 1 (MOSPD1), mRNA.
DQ891128 - Synthetic construct clone IMAGE:100003758; FLH169557.01X; RZPDo839D0896D motile sperm domain containing 1 (MOSPD1) gene, encodes complete protein.
DQ894307 - Synthetic construct Homo sapiens clone IMAGE:100008767; FLH169554.01L; RZPDo839D0895D motile sperm domain containing 1 (MOSPD1) gene, encodes complete protein.
AK299074 - Homo sapiens cDNA FLJ60817 complete cds, highly similar to Motile sperm domain-containing protein 1.
JD027038 - Sequence 8062 from Patent EP1572962.
JD031296 - Sequence 12320 from Patent EP1572962.
AF086333 - Homo sapiens full length insert cDNA clone ZD55A11.

-  Other Names for This Gene
  Alternate Gene Symbols: DQ323992, Q9UJG1-2
UCSC ID: uc004eya.3
RefSeq Accession: NM_019556
Protein: Q9UJG1-2, splice isoform of Q9UJG1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: DQ323992.1
exon count: 4CDS single in 3' UTR: no RNA size: 480
ORF size: 480CDS single in intron: no Alignment % ID: 99.79
txCdsPredict score: 1042.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.