Human Gene MOSPD1 (uc004eya.3)
Description: Homo sapiens motile sperm domain containing 1 (MOSPD1), mRNA.
Transcript (Including UTRs)
Position: hg19 chrX:134,021,662-134,033,564 Size: 11,903 Total Exon Count: 4 Strand: -
Coding Region
Position: hg19 chrX:134,023,191-134,033,463 Size: 10,273 Coding Exon Count: 4
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
MalaCards Disease Associations
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
D000082
Acetaminophen
D001564
Benzo(a)pyrene
D013749
Tetrachlorodibenzodioxin
C032668
1-nitropyrene
C111118
2',3,3',4',5-pentachloro-4-hydroxybiphenyl
C014211
2,3,7,8-tetrachlorodibenzofuran
D015123
7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
D016604
Aflatoxin B1
D017638
Asbestos, Crocidolite
D019327
Copper Sulfate
more ... click here to view the complete list
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF00635 - MSP (Major sperm protein) domain
SCOP Domains: 49354 - PapD-like
ModBase Predicted Comparative 3D Structure on Q9UJG1-2
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
BC005700 - Homo sapiens motile sperm domain containing 1, mRNA (cDNA clone MGC:4987 IMAGE:3450155), complete cds.AL137163 - Novel human gene mapping to chomosome X.JD362607 - Sequence 343631 from Patent EP1572962.JD540896 - Sequence 521920 from Patent EP1572962.JD224336 - Sequence 205360 from Patent EP1572962.JD046609 - Sequence 27633 from Patent EP1572962.JD375389 - Sequence 356413 from Patent EP1572962.JD155204 - Sequence 136228 from Patent EP1572962.JD154028 - Sequence 135052 from Patent EP1572962.JD239372 - Sequence 220396 from Patent EP1572962.JD390268 - Sequence 371292 from Patent EP1572962.JD410647 - Sequence 391671 from Patent EP1572962.JD320461 - Sequence 301485 from Patent EP1572962.AK299172 - Homo sapiens cDNA FLJ60824 complete cds, highly similar to Motile sperm domain-containing protein 1.AK307196 - Homo sapiens cDNA, FLJ97144.JD172092 - Sequence 153116 from Patent EP1572962.JD087755 - Sequence 68779 from Patent EP1572962.DQ323992 - Homo sapiens MOSPD1 mRNA, complete cds, alternatively spliced.AK316570 - Homo sapiens cDNA, FLJ93634, Homo sapiens motile sperm domain containing 1 (MOSPD1), mRNA.DQ891128 - Synthetic construct clone IMAGE:100003758; FLH169557.01X; RZPDo839D0896D motile sperm domain containing 1 (MOSPD1) gene, encodes complete protein.DQ894307 - Synthetic construct Homo sapiens clone IMAGE:100008767; FLH169554.01L; RZPDo839D0895D motile sperm domain containing 1 (MOSPD1) gene, encodes complete protein.AK299074 - Homo sapiens cDNA FLJ60817 complete cds, highly similar to Motile sperm domain-containing protein 1.JD027038 - Sequence 8062 from Patent EP1572962.JD031296 - Sequence 12320 from Patent EP1572962.AF086333 - Homo sapiens full length insert cDNA clone ZD55A11.
Other Names for This Gene
Alternate Gene Symbols: DQ323992, Q9UJG1-2UCSC ID: uc004eya.3RefSeq Accession: NM_019556
Protein: Q9UJG1-2 , splice isoform of Q9UJG1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
DQ323992.1
exon count:
4 CDS single in 3' UTR:
no
RNA size:
480
ORF size:
480 CDS single in intron:
no
Alignment % ID:
99.79
txCdsPredict score:
1042.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.