Human Gene WASH7P (uc009vis.3)

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Description: Homo sapiens WAS protein family homolog 7 pseudogene (WASH7P), non-coding RNA.
Transcript (Including UTRs)
Position: hg19 chr1:14,362-16,765 Size: 2,404 Total Exon Count: 4 Strand: -

Page Index	Sequence and Links	RNA-Seq Expression	Microarray Expression	Other Species	mRNA Descriptions
Other Names	Model Information	Methods

Data last updated at UCSC: 2013-06-14

Sequence and Links to Tools and Databases

Genomic Sequence (chr1:14,362-16,765)			mRNA (may differ from genome)		No protein
Gene Sorter	Genome Browser	Other Species FASTA	VisiGene	Table Schema	BioGPS
CGAP	Ensembl	ExonPrimer	H-INV	HGNC	Lynx
PubMed

RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 13.25 RPKM in Prostate Total median expression: 374.16 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Microarray Expression Data


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Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs


	BC015400 - Homo sapiens WAS protein family homolog 2 pseudogene, mRNA (cDNA clone IMAGE:4156973). BC110991 - Homo sapiens CXYorf1-related protein, mRNA (cDNA clone IMAGE:5241002). BC073913 - Homo sapiens WAS protein family homolog 2 pseudogene, mRNA (cDNA clone IMAGE:5163655). BC093083 - Homo sapiens WAS protein family homolog 2 pseudogene, mRNA (cDNA clone IMAGE:30388014). BC063555 - Homo sapiens CXYorf1-related protein, mRNA (cDNA clone IMAGE:4940747). BC063893 - Homo sapiens cDNA clone IMAGE:30368489, partial cds. BC053987 - Homo sapiens CXYorf1-related protein, mRNA (cDNA clone IMAGE:5814725), partial cds. BC048328 - Homo sapiens WAS protein family homolog 2 pseudogene, mRNA (cDNA clone IMAGE:5192099). BC027921 - Homo sapiens cDNA clone IMAGE:5225823, ** WARNING: chimeric clone **. BC063470 - Homo sapiens CXYorf1-related protein, mRNA (cDNA clone IMAGE:5211206). AL137714 - Homo sapiens mRNA; cDNA DKFZp434K1323 (from clone DKFZp434K1323). BX537637 - Homo sapiens mRNA; cDNA DKFZp686C24272 (from clone DKFZp686C24272). AK024481 - Homo sapiens mRNA for FLJ00075 protein, partial cds. AK092583 - Homo sapiens cDNA FLJ35264 fis, clone PROST2004817. AX747611 - Sequence 1136 from Patent EP1308459. AK056232 - Homo sapiens cDNA FLJ31670 fis, clone NT2RI2004984. BC094698 - Homo sapiens cDNA clone IMAGE:30389644. BC041177 - Homo sapiens CXYorf1-related protein, mRNA (cDNA clone IMAGE:6042646), partial cds. AY217347 - Homo sapiens unknown mRNA. JD043865 - Sequence 24889 from Patent EP1572962. JD464022 - Sequence 445046 from Patent EP1572962. JD464023 - Sequence 445047 from Patent EP1572962. JD426250 - Sequence 407274 from Patent EP1572962. JD319762 - Sequence 300786 from Patent EP1572962. JD439184 - Sequence 420208 from Patent EP1572962. AK289708 - Homo sapiens cDNA FLJ75027 complete cds, highly similar to Homo sapiens CXYorf1-related protein (MGC52000), mRNA. JD386972 - Sequence 367996 from Patent EP1572962. JD469492 - Sequence 450516 from Patent EP1572962. AY341937 - Homo sapiens chromosome 9 CXYorf1 mRNA, complete cds. JD371043 - Sequence 352067 from Patent EP1572962. JD186991 - Sequence 168015 from Patent EP1572962. JD178321 - Sequence 159345 from Patent EP1572962. JD371044 - Sequence 352068 from Patent EP1572962. JD492409 - Sequence 473433 from Patent EP1572962. JD248147 - Sequence 229171 from Patent EP1572962. JD044295 - Sequence 25319 from Patent EP1572962. JD433165 - Sequence 414189 from Patent EP1572962. AK308566 - Homo sapiens cDNA, FLJ98607. JD460507 - Sequence 441531 from Patent EP1572962. AK302089 - Homo sapiens cDNA FLJ51139 complete cds. AK308574 - Homo sapiens cDNA, FLJ98615. JD389037 - Sequence 370061 from Patent EP1572962. AK309926 - Homo sapiens cDNA, FLJ99967. JD406735 - Sequence 387759 from Patent EP1572962. AK310121 - Homo sapiens cDNA, FLJ17163. AK316487 - Homo sapiens cDNA, FLJ79386 complete cds. JD455749 - Sequence 436773 from Patent EP1572962. JD115443 - Sequence 96467 from Patent EP1572962. JD365642 - Sequence 346666 from Patent EP1572962. JD123346 - Sequence 104370 from Patent EP1572962. JD054019 - Sequence 35043 from Patent EP1572962. JD309150 - Sequence 290174 from Patent EP1572962. AK310139 - Homo sapiens cDNA, FLJ17181.

Other Names for This Gene


	Alternate Gene Symbols: BC047449 UCSC ID: uc009vis.3 RefSeq Accession: NR_024540

Gene Model Information

category:	antisense	nonsense-mediated-decay:	no	RNA accession:	BC047449.1
exon count:	4	CDS single in 3' UTR:	no	RNA size:	1748
ORF size:	0	CDS single in intron:	no	Alignment % ID:	98.96
txCdsPredict score:	614.00	frame shift in genome:	no	% Coverage:	45.59
has start codon:	no	stop codon in genome:	no	# of Alignments:	3
has end codon:	no	retained intron:	no	# AT/AC introns	0
selenocysteine:	no	end bleed into intron:	0	# strange splices:	0

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Methods, Credits, and Use Restrictions


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