Human Gene ANKRD13C (uc009wbk.3)
Description: Homo sapiens ankyrin repeat domain 13C (ANKRD13C), mRNA.
Transcript (Including UTRs)
Position: hg19 chr1:70,724,685-70,820,417 Size: 95,733 Total Exon Count: 12 Strand: -
Coding Region
Position: hg19 chr1:70,728,400-70,820,091 Size: 91,692 Coding Exon Count: 12
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF00023 - Ankyrin repeat
PF11904 - GPCR-chaperone
SCOP Domains: 48403 - Ankyrin repeat
ModBase Predicted Comparative 3D Structure on Q8N6S4-2
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
AL136717 - Homo sapiens mRNA; cDNA DKFZp566D1346 (from clone DKFZp566D1346).BC028840 - Homo sapiens ankyrin repeat domain 13C, mRNA (cDNA clone MGC:39111 IMAGE:4558748), complete cds.AB462946 - Synthetic construct DNA, clone: pF1KB8699, Homo sapiens ANKRD13C gene for ankyrin repeat domain 13C, without stop codon, in Flexi system.AM392912 - Synthetic construct Homo sapiens clone IMAGE:100002388 for hypothetical protein (ANKRD13C gene).AM393469 - Synthetic construct Homo sapiens clone IMAGE:100002387 for hypothetical protein (ANKRD13C gene).AK074187 - Homo sapiens cDNA FLJ14998 fis, clone NT2RP3001396, highly similar to Ankyrin repeat domain-containing protein 13C.JD091925 - Sequence 72949 from Patent EP1572962.JD224154 - Sequence 205178 from Patent EP1572962.JD085372 - Sequence 66396 from Patent EP1572962.JD244694 - Sequence 225718 from Patent EP1572962.JD181600 - Sequence 162624 from Patent EP1572962.JD048455 - Sequence 29479 from Patent EP1572962.JD503018 - Sequence 484042 from Patent EP1572962.JD350179 - Sequence 331203 from Patent EP1572962.JD268607 - Sequence 249631 from Patent EP1572962.JD111128 - Sequence 92152 from Patent EP1572962.BC016937 - Homo sapiens ankyrin repeat domain 13C, mRNA (cDNA clone IMAGE:3845875), complete cds.JD388741 - Sequence 369765 from Patent EP1572962.JD236202 - Sequence 217226 from Patent EP1572962.JD196690 - Sequence 177714 from Patent EP1572962.JD538517 - Sequence 519541 from Patent EP1572962.JD332884 - Sequence 313908 from Patent EP1572962.JD336578 - Sequence 317602 from Patent EP1572962.JD443937 - Sequence 424961 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: AL136717, NM_030816, NP_110443, Q8N6S4-2UCSC ID: uc009wbk.3RefSeq Accession: NM_030816
Protein: Q8N6S4-2 , splice isoform of Q8N6S4
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
AL136717.1
exon count:
12 CDS single in 3' UTR:
no
RNA size:
3346
ORF size:
1521 CDS single in intron:
no
Alignment % ID:
99.88
txCdsPredict score:
3103.50 frame shift in genome:
no
% Coverage:
99.43
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.