Human Gene SHANK2-AS3 (uc009yso.3)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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KJ901184 - Synthetic construct Homo sapiens clone ccsbBroadEn_10578 SHANK2-AS3 gene, encodes complete protein. JD344937 - Sequence 325961 from Patent EP1572962. BC004224 - Homo sapiens chromosome 11 open reading frame 76, mRNA (cDNA clone MGC:4762 IMAGE:3537945), complete cds. JD372647 - Sequence 353671 from Patent EP1572962. JD440075 - Sequence 421099 from Patent EP1572962. JD298751 - Sequence 279775 from Patent EP1572962. JD240292 - Sequence 221316 from Patent EP1572962. JD450154 - Sequence 431178 from Patent EP1572962. JD202164 - Sequence 183188 from Patent EP1572962. JD198259 - Sequence 179283 from Patent EP1572962. JD340171 - Sequence 321195 from Patent EP1572962. JD039179 - Sequence 20203 from Patent EP1572962. JD045644 - Sequence 26668 from Patent EP1572962. JD250681 - Sequence 231705 from Patent EP1572962. JD045273 - Sequence 26297 from Patent EP1572962. JD368033 - Sequence 349057 from Patent EP1572962. JD265771 - Sequence 246795 from Patent EP1572962. JD042416 - Sequence 23440 from Patent EP1572962. JD078911 - Sequence 59935 from Patent EP1572962. JD264402 - Sequence 245426 from Patent EP1572962. JD122847 - Sequence 103871 from Patent EP1572962. JD335515 - Sequence 316539 from Patent EP1572962. JD494729 - Sequence 475753 from Patent EP1572962. JD314284 - Sequence 295308 from Patent EP1572962. JD045323 - Sequence 26347 from Patent EP1572962. JD243961 - Sequence 224985 from Patent EP1572962. JD494965 - Sequence 475989 from Patent EP1572962. JD363148 - Sequence 344172 from Patent EP1572962. JD238493 - Sequence 219517 from Patent EP1572962. JD266488 - Sequence 247512 from Patent EP1572962. JD223060 - Sequence 204084 from Patent EP1572962. JD179384 - Sequence 160408 from Patent EP1572962. JD376562 - Sequence 357586 from Patent EP1572962. JD534411 - Sequence 515435 from Patent EP1572962. JD451489 - Sequence 432513 from Patent EP1572962. JD364521 - Sequence 345545 from Patent EP1572962. JD059702 - Sequence 40726 from Patent EP1572962. JD155781 - Sequence 136805 from Patent EP1572962. JD534733 - Sequence 515757 from Patent EP1572962. JD366218 - Sequence 347242 from Patent EP1572962. JD517290 - Sequence 498314 from Patent EP1572962. JD105477 - Sequence 86501 from Patent EP1572962. JD164505 - Sequence 145529 from Patent EP1572962.
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Other Names for This Gene
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Alternate Gene Symbols: NR_073536, uc009yso.2 UCSC ID: uc009yso.3 RefSeq Accession: NR_073536
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Gene Model Information
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category:
| noncoding
| nonsense-mediated-decay:
| no
| RNA accession:
| NR_073536.1
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exon count:
| 3 | CDS single in 3' UTR:
| no
| RNA size:
| 1702 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 100.00 |
txCdsPredict score:
| 572.00 | frame shift in genome:
| no
| % Coverage:
| 98.88 |
has start codon:
| no
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| no
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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