Human Gene SHANK2-AS3 (uc009yso.3)
  Description: Homo sapiens SHANK2 antisense RNA 3 (SHANK2-AS3), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr11:70,708,895-70,711,220 Size: 2,326 Total Exon Count: 3 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:70,708,895-70,711,220)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.00 RPKM in Adipose - Subcutaneous
Total median expression: 0.00 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  KJ901184 - Synthetic construct Homo sapiens clone ccsbBroadEn_10578 SHANK2-AS3 gene, encodes complete protein.
JD344937 - Sequence 325961 from Patent EP1572962.
BC004224 - Homo sapiens chromosome 11 open reading frame 76, mRNA (cDNA clone MGC:4762 IMAGE:3537945), complete cds.
JD372647 - Sequence 353671 from Patent EP1572962.
JD440075 - Sequence 421099 from Patent EP1572962.
JD298751 - Sequence 279775 from Patent EP1572962.
JD240292 - Sequence 221316 from Patent EP1572962.
JD450154 - Sequence 431178 from Patent EP1572962.
JD202164 - Sequence 183188 from Patent EP1572962.
JD198259 - Sequence 179283 from Patent EP1572962.
JD340171 - Sequence 321195 from Patent EP1572962.
JD039179 - Sequence 20203 from Patent EP1572962.
JD045644 - Sequence 26668 from Patent EP1572962.
JD250681 - Sequence 231705 from Patent EP1572962.
JD045273 - Sequence 26297 from Patent EP1572962.
JD368033 - Sequence 349057 from Patent EP1572962.
JD265771 - Sequence 246795 from Patent EP1572962.
JD042416 - Sequence 23440 from Patent EP1572962.
JD078911 - Sequence 59935 from Patent EP1572962.
JD264402 - Sequence 245426 from Patent EP1572962.
JD122847 - Sequence 103871 from Patent EP1572962.
JD335515 - Sequence 316539 from Patent EP1572962.
JD494729 - Sequence 475753 from Patent EP1572962.
JD314284 - Sequence 295308 from Patent EP1572962.
JD045323 - Sequence 26347 from Patent EP1572962.
JD243961 - Sequence 224985 from Patent EP1572962.
JD494965 - Sequence 475989 from Patent EP1572962.
JD363148 - Sequence 344172 from Patent EP1572962.
JD238493 - Sequence 219517 from Patent EP1572962.
JD266488 - Sequence 247512 from Patent EP1572962.
JD223060 - Sequence 204084 from Patent EP1572962.
JD179384 - Sequence 160408 from Patent EP1572962.
JD376562 - Sequence 357586 from Patent EP1572962.
JD534411 - Sequence 515435 from Patent EP1572962.
JD451489 - Sequence 432513 from Patent EP1572962.
JD364521 - Sequence 345545 from Patent EP1572962.
JD059702 - Sequence 40726 from Patent EP1572962.
JD155781 - Sequence 136805 from Patent EP1572962.
JD534733 - Sequence 515757 from Patent EP1572962.
JD366218 - Sequence 347242 from Patent EP1572962.
JD517290 - Sequence 498314 from Patent EP1572962.
JD105477 - Sequence 86501 from Patent EP1572962.
JD164505 - Sequence 145529 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_073536, uc009yso.2
UCSC ID: uc009yso.3
RefSeq Accession: NR_073536

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_073536.1
exon count: 3CDS single in 3' UTR: no RNA size: 1702
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 572.00frame shift in genome: no % Coverage: 98.88
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.