Human Gene KCTD10 (uc009zvi.1)
  Description: Homo sapiens potassium channel tetramerisation domain containing 10 (KCTD10), mRNA.
RefSeq Summary (NM_031954): The protein encoded by this gene binds proliferating cell nuclear antigen (PCNA) and may be involved in DNA synthesis and cell proliferation. In addition, the encoded protein may be a tumor suppressor. Several protein-coding and non-protein coding transcript variants have been found for this gene. [provided by RefSeq, Dec 2015].
Transcript (Including UTRs)
   Position: hg19 chr12:109,886,460-109,907,533 Size: 21,074 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr12:109,889,400-109,907,527 Size: 18,128 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:109,886,460-109,907,533)mRNA (may differ from genome)Protein (287 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHGNCLynxMGIOMIMPubMed
TreefamUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: F5GWA4_HUMAN
DESCRIPTION: SubName: Full=BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3;
SIMILARITY: Contains 1 BTB (POZ) domain.
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): KCTD10
CDC HuGE Published Literature: KCTD10
Positive Disease Associations: Body Composition , Cholesterol, HDL , Neuroblastoma
Related Studies:
  1. Body Composition
    , , . [PubMed 0]
  2. Cholesterol, HDL
    Cristen J Willer et al. Nature genetics 2008, Newly identified loci that influence lipid concentrations and risk of coronary artery disease., Nature genetics. [PubMed 18193043]
  3. Cholesterol, HDL
    Sekar Kathiresan et al. Nature genetics 2009, Common variants at 30 loci contribute to polygenic dyslipidemia., Nature genetics. [PubMed 19060906]
           more ... click here to view the complete list

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 44.90 RPKM in Artery - Tibial
Total median expression: 708.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -965.412940-0.328 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000210 - BTB/POZ-like
IPR011333 - BTB/POZ_fold
IPR003131 - T1-type_BTB

Pfam Domains:
PF00651 - BTB/POZ domain
PF02214 - BTB/POZ domain

SCOP Domains:
54695 - POZ domain

ModBase Predicted Comparative 3D Structure on F5GWA4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0051260 protein homooligomerization

Cellular Component:
GO:0005654 nucleoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AY205299 - Homo sapiens ULR061 mRNA, complete cds.
BC040062 - Homo sapiens potassium channel tetramerisation domain containing 10, mRNA (cDNA clone MGC:46001 IMAGE:5494016), complete cds.
JD258300 - Sequence 239324 from Patent EP1572962.
JD372710 - Sequence 353734 from Patent EP1572962.
JD544063 - Sequence 525087 from Patent EP1572962.
JD060517 - Sequence 41541 from Patent EP1572962.
JD323956 - Sequence 304980 from Patent EP1572962.
JD386432 - Sequence 367456 from Patent EP1572962.
JD356712 - Sequence 337736 from Patent EP1572962.
JD308109 - Sequence 289133 from Patent EP1572962.
JD435409 - Sequence 416433 from Patent EP1572962.
JD435410 - Sequence 416434 from Patent EP1572962.
JD286956 - Sequence 267980 from Patent EP1572962.
JD061488 - Sequence 42512 from Patent EP1572962.
JD149045 - Sequence 130069 from Patent EP1572962.
JD119411 - Sequence 100435 from Patent EP1572962.
JD524246 - Sequence 505270 from Patent EP1572962.
JD418052 - Sequence 399076 from Patent EP1572962.
JD533295 - Sequence 514319 from Patent EP1572962.
AK123733 - Homo sapiens cDNA FLJ41739 fis, clone HSYRA2002590, highly similar to BTB/POZ domain-containing protein KCTD10.
AF113208 - Homo sapiens MSTP028 mRNA, complete cds.
AB209358 - Homo sapiens mRNA for potassium channel tetramerisation domain containing 10 variant protein.
AK092170 - Homo sapiens cDNA FLJ34851 fis, clone NT2NE2011998, highly similar to BTB/POZ domain-containing protein KCTD10.
AX747390 - Sequence 915 from Patent EP1308459.
AK027543 - Homo sapiens cDNA FLJ14637 fis, clone NT2RP2001327, moderately similar to TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN 1.
JD369788 - Sequence 350812 from Patent EP1572962.
JD280988 - Sequence 262012 from Patent EP1572962.
JD432748 - Sequence 413772 from Patent EP1572962.
JD119207 - Sequence 100231 from Patent EP1572962.
JD488723 - Sequence 469747 from Patent EP1572962.
JD045422 - Sequence 26446 from Patent EP1572962.
JD494174 - Sequence 475198 from Patent EP1572962.
JD488405 - Sequence 469429 from Patent EP1572962.
JD109253 - Sequence 90277 from Patent EP1572962.
JD299372 - Sequence 280396 from Patent EP1572962.
JD403533 - Sequence 384557 from Patent EP1572962.
JD423442 - Sequence 404466 from Patent EP1572962.
JD118709 - Sequence 99733 from Patent EP1572962.
JD122445 - Sequence 103469 from Patent EP1572962.
JD237626 - Sequence 218650 from Patent EP1572962.
JD546473 - Sequence 527497 from Patent EP1572962.
JD427207 - Sequence 408231 from Patent EP1572962.
JD135479 - Sequence 116503 from Patent EP1572962.
JD466801 - Sequence 447825 from Patent EP1572962.
JD242109 - Sequence 223133 from Patent EP1572962.
JD372298 - Sequence 353322 from Patent EP1572962.
JD381654 - Sequence 362678 from Patent EP1572962.
JD489567 - Sequence 470591 from Patent EP1572962.
JD547462 - Sequence 528486 from Patent EP1572962.
JD047005 - Sequence 28029 from Patent EP1572962.
JD302456 - Sequence 283480 from Patent EP1572962.
AK056912 - Homo sapiens cDNA FLJ32350 fis, clone PROST2007289, moderately similar to TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN 1, ENDOTHELIAL.
AK309783 - Homo sapiens cDNA, FLJ99824.
JD050994 - Sequence 32018 from Patent EP1572962.
JD230968 - Sequence 211992 from Patent EP1572962.
AK222548 - Homo sapiens mRNA for potassium channel tetramerisation domain containing 10 variant, clone: CAE03470.
AY597809 - Homo sapiens chromosome 12 potassium channel tetramerization domain containing 10 (KCTD10) mRNA, complete cds, alternatively spliced.
KJ899736 - Synthetic construct Homo sapiens clone ccsbBroadEn_09130 KCTD10 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: AY597809, F5GWA4, F5GWA4_HUMAN, NM_031954, NP_114160
UCSC ID: uc009zvi.1
RefSeq Accession: NM_031954
Protein: F5GWA4

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AY597809.1
exon count: 6CDS single in 3' UTR: no RNA size: 873
ORF size: 864CDS single in intron: no Alignment % ID: 99.66
txCdsPredict score: 1928.00frame shift in genome: no % Coverage: 99.66
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.