Human Gene HERC2P9 (uc010azc.3)
  Description: Homo sapiens hect domain and RLD 2 pseudogene 9 (HERC2P9), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr15:28,899,420-28,930,410 Size: 30,991 Total Exon Count: 14 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:28,899,420-28,930,410)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.01 RPKM in Nerve - Tibial
Total median expression: 252.14 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK293845 - Homo sapiens cDNA FLJ59185 complete cds, highly similar to HECT domain and RCC1-like domain-containing protein 2.
JD379299 - Sequence 360323 from Patent EP1572962.
JD040201 - Sequence 21225 from Patent EP1572962.
BC047911 - Homo sapiens hect domain and RLD 2 pseudogene, mRNA (cDNA clone IMAGE:6044940).
AK293512 - Homo sapiens cDNA FLJ55955 complete cds, highly similar to HECT domain and RCC1-like domain-containing protein 2.
CU690532 - Synthetic construct Homo sapiens gateway clone IMAGE:100021421 5' read LOC440248 mRNA.
KJ900992 - Synthetic construct Homo sapiens clone ccsbBroadEn_10386 HERC2P9 gene, encodes complete protein.
BC128548 - Homo sapiens cDNA clone IMAGE:40121446, containing frame-shift errors.
JD546184 - Sequence 527208 from Patent EP1572962.
JD081445 - Sequence 62469 from Patent EP1572962.
JD527839 - Sequence 508863 from Patent EP1572962.
JD265220 - Sequence 246244 from Patent EP1572962.
JD434589 - Sequence 415613 from Patent EP1572962.
JD454370 - Sequence 435394 from Patent EP1572962.
AL832775 - Homo sapiens mRNA; cDNA DKFZp686D037 (from clone DKFZp686D037).
AK056876 - Homo sapiens cDNA FLJ32314 fis, clone PROST2003302.
JD324213 - Sequence 305237 from Patent EP1572962.
AF129930 - Homo sapiens I.M.A.G.E. clone 321824, mRNA sequence.
JD530161 - Sequence 511185 from Patent EP1572962.
JD079188 - Sequence 60212 from Patent EP1572962.
JD101206 - Sequence 82230 from Patent EP1572962.
JD075976 - Sequence 57000 from Patent EP1572962.
JD185278 - Sequence 166302 from Patent EP1572962.
JD417898 - Sequence 398922 from Patent EP1572962.
JD292024 - Sequence 273048 from Patent EP1572962.
JD359568 - Sequence 340592 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_036443
UCSC ID: uc010azc.3
RefSeq Accession: NR_036443

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: yes RNA accession: NR_036443.1
exon count: 14CDS single in 3' UTR: no RNA size: 2962
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2160.00frame shift in genome: no % Coverage: 99.49
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.