Human Gene ZNF280D (uc010bfp.3)
  Description: Homo sapiens zinc finger protein 280D (ZNF280D), transcript variant 2, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr15:56,922,374-56,974,675 Size: 52,302 Total Exon Count: 14 Strand: -


Page IndexSequence and LinksPrimersMalaCardsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:56,922,374-56,974,675)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerGeneNetworkH-INVHGNC
LynxMalacardsPubMedWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ZNF280D
Diseases sorted by gene-association score: reading disorder (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.38 RPKM in Cervix - Endocervix
Total median expression: 158.92 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF208550 - JP 2014500723-A/16053: Polycomb-Associated Non-Coding RNAs.
BC040532 - Homo sapiens zinc finger protein 280D, mRNA (cDNA clone IMAGE:5261474).
BX641000 - Homo sapiens mRNA; cDNA DKFZp686H13148 (from clone DKFZp686H13148); complete cds.
AB046804 - Homo sapiens KIAA1584 mRNA for KIAA1584 protein.
BC130451 - Homo sapiens zinc finger protein 280D, mRNA (cDNA clone MGC:163323 IMAGE:40146482), complete cds.
BC136412 - Homo sapiens zinc finger protein 280D, mRNA (cDNA clone MGC:168023 IMAGE:9020400), complete cds.
BX640707 - Homo sapiens mRNA; cDNA DKFZp686F11161 (from clone DKFZp686F11161); complete cds.
AK295159 - Homo sapiens cDNA FLJ56078 complete cds, highly similar to Suppressor of hairy wing homolog 4.
AK289739 - Homo sapiens cDNA FLJ76213 complete cds, highly similar to Homo sapiens suppressor of hairy wing homolog 4 (Drosophila) (SUHW4), transcript variant 2, mRNA.
AM392650 - Synthetic construct Homo sapiens clone IMAGE:100002534 for hypothetical protein (SUHW4 gene).
AM393745 - Synthetic construct Homo sapiens clone IMAGE:100002533 for hypothetical protein (SUHW4 gene).
BX640637 - Homo sapiens mRNA; cDNA DKFZp779P138 (from clone DKFZp779P138); complete cds.
BC036541 - Homo sapiens cDNA clone IMAGE:4829311.
AK310882 - Homo sapiens cDNA, FLJ17924.
MA444127 - JP 2018138019-A/16053: Polycomb-Associated Non-Coding RNAs.
LF377638 - JP 2014500723-A/185141: Polycomb-Associated Non-Coding RNAs.
AL136634 - Homo sapiens mRNA; cDNA DKFZp564H102 (from clone DKFZp564H102); complete cds.
AK000093 - Homo sapiens cDNA FLJ20086 fis, clone COL03629.
JD160480 - Sequence 141504 from Patent EP1572962.
JD506801 - Sequence 487825 from Patent EP1572962.
LF377637 - JP 2014500723-A/185140: Polycomb-Associated Non-Coding RNAs.
JD347838 - Sequence 328862 from Patent EP1572962.
JD509098 - Sequence 490122 from Patent EP1572962.
JD285954 - Sequence 266978 from Patent EP1572962.
AB385484 - Synthetic construct DNA, clone: pF1KA1584, Homo sapiens SUHW4 gene for suppressor of hairy wing homolog 4, complete cds, without stop codon, in Flexi system.
LF377636 - JP 2014500723-A/185139: Polycomb-Associated Non-Coding RNAs.
LF377635 - JP 2014500723-A/185138: Polycomb-Associated Non-Coding RNAs.
JD378852 - Sequence 359876 from Patent EP1572962.
LF377634 - JP 2014500723-A/185137: Polycomb-Associated Non-Coding RNAs.
JD073517 - Sequence 54541 from Patent EP1572962.
JD049286 - Sequence 30310 from Patent EP1572962.
JD357787 - Sequence 338811 from Patent EP1572962.
AK025073 - Homo sapiens cDNA: FLJ21420 fis, clone COL04105.
LF377622 - JP 2014500723-A/185125: Polycomb-Associated Non-Coding RNAs.
JD082130 - Sequence 63154 from Patent EP1572962.
MA613215 - JP 2018138019-A/185141: Polycomb-Associated Non-Coding RNAs.
MA613214 - JP 2018138019-A/185140: Polycomb-Associated Non-Coding RNAs.
MA613213 - JP 2018138019-A/185139: Polycomb-Associated Non-Coding RNAs.
MA613212 - JP 2018138019-A/185138: Polycomb-Associated Non-Coding RNAs.
MA613211 - JP 2018138019-A/185137: Polycomb-Associated Non-Coding RNAs.
MA613199 - JP 2018138019-A/185125: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AK000093
UCSC ID: uc010bfp.3
RefSeq Accession: NM_001002843

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: AK000093.1
exon count: 14CDS single in 3' UTR: no RNA size: 3572
ORF size: 0CDS single in intron: no Alignment % ID: 99.89
txCdsPredict score: 2425.00frame shift in genome: no % Coverage: 98.82
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.