Human Gene EWSAT1 (uc010big.3)
  Description: Homo sapiens long intergenic non-protein coding RNA 277 (EWSAT1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr15:69,373,226-69,388,163 Size: 14,938 Total Exon Count: 4 Strand: +


Page IndexSequence and LinksPrimersMalaCardsRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:69,373,226-69,388,163)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVLynxMalacardsPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EWSAT1
Diseases sorted by gene-association score: ewing sarcoma (5)

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.33 RPKM in Testis
Total median expression: 16.15 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK097560 - Homo sapiens cDNA FLJ40241 fis, clone TESTI2023800.
BC101594 - Homo sapiens transmembrane protein 84, mRNA (cDNA clone IMAGE:8069100).
BC101596 - Homo sapiens transmembrane protein 84, mRNA (cDNA clone IMAGE:8069102).
HM005520 - Homo sapiens clone HTL-T-207 testicular tissue protein Li 207 mRNA, complete cds.
AK091087 - Homo sapiens cDNA FLJ33768 fis, clone BRHIP2000021.
AX746773 - Sequence 298 from Patent EP1308459.
AK292174 - Homo sapiens cDNA FLJ77642 complete cds.
JD326216 - Sequence 307240 from Patent EP1572962.
JD545394 - Sequence 526418 from Patent EP1572962.
JD486174 - Sequence 467198 from Patent EP1572962.
JD213664 - Sequence 194688 from Patent EP1572962.
JD040790 - Sequence 21814 from Patent EP1572962.
JD245270 - Sequence 226294 from Patent EP1572962.
JD037755 - Sequence 18779 from Patent EP1572962.
JD096765 - Sequence 77789 from Patent EP1572962.
JD208884 - Sequence 189908 from Patent EP1572962.
JD223187 - Sequence 204211 from Patent EP1572962.
JD125173 - Sequence 106197 from Patent EP1572962.
JD498586 - Sequence 479610 from Patent EP1572962.
JD480161 - Sequence 461185 from Patent EP1572962.
JD545254 - Sequence 526278 from Patent EP1572962.
JD174284 - Sequence 155308 from Patent EP1572962.
JD438111 - Sequence 419135 from Patent EP1572962.
JD104408 - Sequence 85432 from Patent EP1572962.
JD121455 - Sequence 102479 from Patent EP1572962.
JD534261 - Sequence 515285 from Patent EP1572962.
JD324870 - Sequence 305894 from Patent EP1572962.
JD133430 - Sequence 114454 from Patent EP1572962.
JD318013 - Sequence 299037 from Patent EP1572962.
JD553047 - Sequence 534071 from Patent EP1572962.
JD544752 - Sequence 525776 from Patent EP1572962.
JD273344 - Sequence 254368 from Patent EP1572962.
JD454539 - Sequence 435563 from Patent EP1572962.
JD081513 - Sequence 62537 from Patent EP1572962.
JD272236 - Sequence 253260 from Patent EP1572962.
JD386020 - Sequence 367044 from Patent EP1572962.
JD253903 - Sequence 234927 from Patent EP1572962.
JD415799 - Sequence 396823 from Patent EP1572962.
JD253006 - Sequence 234030 from Patent EP1572962.
JD101401 - Sequence 82425 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK292174, LINC00277
UCSC ID: uc010big.3
RefSeq Accession: NR_026949

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AK292174.1
exon count: 4CDS single in 3' UTR: no RNA size: 1521
ORF size: 0CDS single in intron: no Alignment % ID: 99.67
txCdsPredict score: 415.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.