Human Gene CEACAM20 (uc010ejq.1)
Description: Homo sapiens carcinoembryonic antigen-related cell adhesion molecule 20 (CEACAM20), transcript variant 4S, mRNA.
Transcript (Including UTRs)
Position: hg19 chr19:45,010,211-45,033,548 Size: 23,338 Total Exon Count: 11 Strand: -
Coding Region
Position: hg19 chr19:45,010,213-45,033,532 Size: 23,320 Coding Exon Count: 11
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): CEACAM20
CDC HuGE Published Literature: CEACAM20
Positive Disease Associations: Tunica Media
Related Studies: Tunica Media , , .
[PubMed 0 ]
Tunica Media , , .
[PubMed 0 ]
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR013098 - Ig_I-set
IPR003599 - Ig_sub
IPR003598 - Ig_sub2
Pfam Domains: PF00047 - Immunoglobulin domain
PF07679 - Immunoglobulin I-set domain
PF13895 - Immunoglobulin domain
PF13927 - Immunoglobulin domain
SCOP Domains: 48726 - Immunoglobulin
ModBase Predicted Comparative 3D Structure on A7LFK8
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
AY358129 - Homo sapiens clone DNA211193 GPAD9366 (UNQ9366) mRNA, complete cds.EU008600 - Homo sapiens carcinoembryonic antigen-related cell adhesion molecule 20 variant 5L (CEACAM20) mRNA, complete cds, alternatively spliced.EU008601 - Homo sapiens carcinoembryonic antigen-related cell adhesion molecule 20 variant 4S (CEACAM20) mRNA, complete cds, alternatively spliced.EU008602 - Homo sapiens carcinoembryonic antigen-related cell adhesion molecule 20 variant 4L (CEACAM20) mRNA, complete cds, alternatively spliced.EU008603 - Homo sapiens carcinoembryonic antigen-related cell adhesion molecule 20 variant 5S (CEACAM20) mRNA, complete cds, alternatively spliced.BC172298 - Synthetic construct Homo sapiens clone IMAGE:100068992, MGC:199003 carcinoembryonic antigen-related cell adhesion molecule 20 (CEACAM20) mRNA, encodes complete protein.
Other Names for This Gene
Alternate Gene Symbols: A7LFK8, A7LFK8_HUMAN, NM_001102598, NP_001096068UCSC ID: uc010ejq.1RefSeq Accession: NM_001102598
Protein: A7LFK8
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001102598.1
exon count:
10 CDS single in 3' UTR:
no
RNA size:
1494
ORF size:
1477 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
2169.00 frame shift in genome:
yes
% Coverage:
99.93
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.