Human Gene CGB7 (uc010emq.1)
  Description: Homo sapiens cDNA FLJ35403 fis, clone SKNSH2006432, highly similar to CHORIOGONADOTROPIN BETA CHAIN PRECURSOR.
Transcript (Including UTRs)
   Position: hg19 chr19:49,558,618-49,561,002 Size: 2,385 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksPrimersMalaCardsRNA-Seq ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:49,558,618-49,561,002)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaEnsembl
ExonPrimerH-INVHGNCLynxMalacardsPubMed
TreefamWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CGB7
Diseases sorted by gene-association score: trisomy 22 (7), choriocarcinoma (5), ectopic pregnancy (4), down syndrome (4), seminoma (4), nonseminomatous germ cell tumor (4), sacrococcygeal teratoma (4), triploidy (4), ulcerative stomatitis (2), mixed ductal-endocrine carcinoma (1)

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.55 RPKM in Prostate
Total median expression: 10.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF207669 - JP 2014500723-A/15172: Polycomb-Associated Non-Coding RNAs.
LF367814 - JP 2014500723-A/175317: Polycomb-Associated Non-Coding RNAs.
MA603391 - JP 2018138019-A/175317: Polycomb-Associated Non-Coding RNAs.
MA443246 - JP 2018138019-A/15172: Polycomb-Associated Non-Coding RNAs.
BC041054 - Homo sapiens chorionic gonadotropin, beta polypeptide, mRNA (cDNA clone MGC:52151 IMAGE:5431911), complete cds.
AK092722 - Homo sapiens cDNA FLJ35403 fis, clone SKNSH2006432, highly similar to CHORIOGONADOTROPIN BETA CHAIN PRECURSOR.
AK125108 - Homo sapiens cDNA FLJ43118 fis, clone CTONG3002909, highly similar to CHORIOGONADOTROPIN BETA CHAIN PRECURSOR.
JD417096 - Sequence 398120 from Patent EP1572962.
JD177996 - Sequence 159020 from Patent EP1572962.
JD151624 - Sequence 132648 from Patent EP1572962.
JD055409 - Sequence 36433 from Patent EP1572962.
JD385646 - Sequence 366670 from Patent EP1572962.
AK297906 - Homo sapiens cDNA FLJ60732 complete cds.
AK310581 - Homo sapiens cDNA, FLJ17623.

-  Other Names for This Gene
  Alternate Gene Symbols: AK310581, CGB
UCSC ID: uc010emq.1
Representative RNA: AK310581

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: AK310581.1
exon count: 3CDS single in 3' UTR: no RNA size: 920
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 440.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.