Human Gene KLK13 (uc010eon.3)
  Description: Homo sapiens kallikrein-related peptidase 13 (KLK13), mRNA.
RefSeq Summary (NM_015596): Kallikreins are a subgroup of serine proteases having diverse physiological functions. Growing evidence suggests that many kallikreins are implicated in carcinogenesis and some have potential as novel cancer and other disease biomarkers. This gene is one of the fifteen kallikrein subfamily members located in a cluster on chromosome 19. Expression of this gene is regulated by steroid hormones and may be useful as a marker for breast cancer. [provided by RefSeq, Jan 2017].
Transcript (Including UTRs)
   Position: hg19 chr19:51,559,463-51,568,367 Size: 8,905 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr19:51,559,844-51,568,324 Size: 8,481 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:51,559,463-51,568,367)mRNA (may differ from genome)Protein (204 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsGeneNetworkH-INV
HGNCLynxMGIPubMedTreefamUniProtKB
Wikipedia

-  Comments and Description Text from UniProtKB
  ID: Q86VI7_HUMAN
DESCRIPTION: SubName: Full=Kallikrein 13 splicing variant 2; SubName: Full=Kallikrein 13, isoform CRA_c;
SIMILARITY: Belongs to the peptidase S1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): KLK13
CDC HuGE Published Literature: KLK13

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 267.11 RPKM in Esophagus - Mucosa
Total median expression: 327.68 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -6.6043-0.153 Picture PostScript Text
3' UTR -90.53381-0.238 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009003 - Pept_cys/ser_Trypsin-like
IPR018114 - Peptidase_S1/S6_AS
IPR001254 - Peptidase_S1_S6
IPR001314 - Peptidase_S1A

Pfam Domains:
PF00089 - Trypsin

SCOP Domains:
50494 - Trypsin-like serine proteases

ModBase Predicted Comparative 3D Structure on Q86VI7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004252 serine-type endopeptidase activity
GO:0008233 peptidase activity
GO:0008236 serine-type peptidase activity
GO:0016787 hydrolase activity

Biological Process:
GO:0006508 proteolysis


-  Descriptions from all associated GenBank mRNAs
  AY923174 - Homo sapiens kallikrein 13 splice variant 7 (KLK13) mRNA, complete cds, alternatively spliced.
AY923175 - Homo sapiens kallikrein 13 splice variant 8 (KLK13) mRNA, complete cds, alternatively spliced.
AY923171 - Homo sapiens kallikrein 13 splice variant 4 (KLK13) mRNA, complete cds, alternatively spliced.
AY923172 - Homo sapiens kallikrein 13 splice variant 5 (KLK13) mRNA, complete cds, alternatively spliced.
AY923173 - Homo sapiens kallikrein 13 splice variant 6 (KLK13) mRNA, complete cds, alternatively spliced.
JD326452 - Sequence 307476 from Patent EP1572962.
JD103031 - Sequence 84055 from Patent EP1572962.
JD095087 - Sequence 76111 from Patent EP1572962.
JD412239 - Sequence 393263 from Patent EP1572962.
JD119924 - Sequence 100948 from Patent EP1572962.
JD102651 - Sequence 83675 from Patent EP1572962.
JD433719 - Sequence 414743 from Patent EP1572962.
JD163924 - Sequence 144948 from Patent EP1572962.
BC069543 - Homo sapiens kallikrein-related peptidase 13, mRNA (cDNA clone MGC:97008 IMAGE:7262217), complete cds.
BC069334 - Homo sapiens kallikrein-related peptidase 13, mRNA (cDNA clone MGC:96996 IMAGE:7262205), complete cds.
JD312732 - Sequence 293756 from Patent EP1572962.
AB108823 - Homo sapiens KLK13 mRNA for kallikrein 13 splicing variant 3, complete cds.
AB108824 - Homo sapiens KLK13 mRNA for kallikrein 13 splicing variant 2, complete cds.
HQ448460 - Synthetic construct Homo sapiens clone IMAGE:100071889; CCSB013855_01 kallikrein-related peptidase 13 (KLK13) gene, encodes complete protein.
KJ893517 - Synthetic construct Homo sapiens clone ccsbBroadEn_02911 KLK13 gene, encodes complete protein.
AB451465 - Homo sapiens KLK13 mRNA for kallikrein 13 precursor, partial cds, clone: FLJ09018AAAF.
AB590885 - Synthetic construct DNA, clone: pFN21AE1770, Homo sapiens KLK13 gene for kallikrein-related peptidase 13, without stop codon, in Flexi system.
AL050220 - Homo sapiens mRNA; cDNA DKFZp586J1923 (from clone DKFZp586J1923).
KX595106 - Homo sapiens nonfunctional kallikrein-related peptidase 13 transcript variant 2 (KLK13) mRNA, partial sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: AB108824, hCG_1642271, Q86VI7, Q86VI7_HUMAN
UCSC ID: uc010eon.3
RefSeq Accession: NM_015596
Protein: Q86VI7

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AB108824.1
exon count: 5CDS single in 3' UTR: no RNA size: 615
ORF size: 615CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1139.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.