Human Gene STRN (uc010ezx.3)
Description: Homo sapiens striatin, calmodulin binding protein (STRN), mRNA.
Transcript (Including UTRs)
Position: hg19 chr2:37,064,841-37,193,615 Size: 128,775 Total Exon Count: 17 Strand: -
Coding Region
Position: hg19 chr2:37,076,599-37,193,606 Size: 117,008 Coding Exon Count: 17
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): STRN
CDC HuGE Published Literature: STRN
MalaCards Disease Associations
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF00400 - WD domain, G-beta repeat
PF08232 - Striatin family
SCOP Domains: 50952 - Soluble quinoprotein glucose dehydrogenase
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
50965 - Galactose oxidase, central domain
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
50993 - Prolyl oligopeptidase, N-terminal domain
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - Dipeptidyl peptidase IV/CD26, N-terminal domain
ModBase Predicted Comparative 3D Structure on O43815-2
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
AK026934 - Homo sapiens cDNA: FLJ23281 fis, clone HEP07243, highly similar to HSSTRIA Homo sapiens mRNA for striatin.AJ223814 - Homo sapiens mRNA for striatin.BC106879 - Homo sapiens striatin, calmodulin binding protein, mRNA (cDNA clone MGC:125642 IMAGE:40027865), complete cds.BC106878 - Homo sapiens striatin, calmodulin binding protein, mRNA (cDNA clone IMAGE:40027864), partial cds.KJ901771 - Synthetic construct Homo sapiens clone ccsbBroadEn_11165 STRN gene, encodes complete protein.AB590635 - Synthetic construct DNA, clone: pFN21AB5794, Homo sapiens STRN gene for striatin, calmodulin binding protein, without stop codon, in Flexi system.AF085351 - Homo sapiens ELISC-1 mRNA, partial cds.BC015406 - Homo sapiens striatin, calmodulin binding protein, mRNA (cDNA clone IMAGE:4391012).JD291946 - Sequence 272970 from Patent EP1572962.JD313905 - Sequence 294929 from Patent EP1572962.JD232038 - Sequence 213062 from Patent EP1572962.BC036416 - Homo sapiens striatin, calmodulin binding protein, mRNA (cDNA clone IMAGE:4795593), with apparent retained intron.AK307836 - Homo sapiens cDNA, FLJ97784.
Other Names for This Gene
Alternate Gene Symbols: BC106879, NM_003162, NP_003153, O43815-2UCSC ID: uc010ezx.3RefSeq Accession: NM_003162
Protein: O43815-2 , splice isoform of O43815
CCDS: CCDS1784.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
BC106879.2
exon count:
17 CDS single in 3' UTR:
no
RNA size:
2254
ORF size:
2232 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
4575.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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