Human Gene CITF22-62D4.1 (uc010gwt.2)
  Description: Homo sapiens hypothetical gene supported by BC001801, mRNA (cDNA clone MGC:3170 IMAGE:3355513), complete cds.
Transcript (Including UTRs)
   Position: hg19 chr22:36,023,038-36,031,181 Size: 8,144 Total Exon Count: 2 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:36,023,038-36,031,181)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
H-INVLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3785.34 RPKM in Muscle - Skeletal
Total median expression: 9376.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC001801 - Homo sapiens hypothetical gene supported by BC001801, mRNA (cDNA clone MGC:3170 IMAGE:3355513), complete cds.
JD239005 - Sequence 220029 from Patent EP1572962.
JD451152 - Sequence 432176 from Patent EP1572962.
JD303745 - Sequence 284769 from Patent EP1572962.
JD136598 - Sequence 117622 from Patent EP1572962.
JD474116 - Sequence 455140 from Patent EP1572962.
JD058404 - Sequence 39428 from Patent EP1572962.
KJ904143 - Synthetic construct Homo sapiens clone ccsbBroadEn_13537 LOC284912 gene, encodes complete protein.
JD228375 - Sequence 209399 from Patent EP1572962.
JD182002 - Sequence 163026 from Patent EP1572962.
JD296186 - Sequence 277210 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC001801, LOC284912
UCSC ID: uc010gwt.2
Representative RNA: BC001801

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BC001801.1
exon count: 2CDS single in 3' UTR: no RNA size: 898
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 533.00frame shift in genome: no % Coverage: 94.54
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.