Human Gene MYRIP (uc010hhu.3)
  Description: Homo sapiens myosin VIIA and Rab interacting protein (MYRIP), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr3:39,851,303-40,301,811 Size: 450,509 Total Exon Count: 17 Strand: +


Page IndexSequence and LinksPrimersGenetic AssociationsMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:39,851,303-40,301,811)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerGeneNetworkH-INVHGNC
LynxMalacardsPubMedTreefam

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): MYRIP
CDC HuGE Published Literature: MYRIP
Positive Disease Associations: Body Composition , Body Mass Index , Echocardiography , Natriuretic Peptide, Brain , Neurobehavioral Manifestations , Sleep , sleep duration
Related Studies:
  1. Body Composition
    , , . [PubMed 0]
  2. Body Composition
    , , . [PubMed 0]
  3. Body Composition
    , , . [PubMed 0]
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: MYRIP
Diseases sorted by gene-association score: griscelli syndrome, type 3 (6), griscelli syndrome (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.27 RPKM in Brain - Amygdala
Total median expression: 148.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK312412 - Homo sapiens cDNA, FLJ92749.
BC092512 - Homo sapiens myosin VIIA and Rab interacting protein, mRNA (cDNA clone MGC:104940 IMAGE:3093499), complete cds.
AK126013 - Homo sapiens cDNA FLJ44025 fis, clone TESTI4026700, highly similar to Rab effector MyRIP.
AF396687 - Homo sapiens rab effector MYRIP (MYRIP) mRNA, complete cds.
BC109311 - Homo sapiens myosin VIIA and Rab interacting protein, mRNA (cDNA clone MGC:130034 IMAGE:40036096), complete cds.
BC109312 - Homo sapiens myosin VIIA and Rab interacting protein, mRNA (cDNA clone MGC:130035 IMAGE:40036097), complete cds.
AK310972 - Homo sapiens cDNA, FLJ18014.
AB083783 - Homo sapiens slac2-c mRNA for Slp homologue lacking C2 domains-c, complete cds.
KJ905446 - Synthetic construct Homo sapiens clone ccsbBroadEn_15029 MYRIP gene, encodes complete protein.
AK125334 - Homo sapiens cDNA FLJ43344 fis, clone NT2RI3008162, highly similar to Rab effector MyRIP.
AK316068 - Homo sapiens cDNA, FLJ78967 complete cds, highly similar to Rab effector MyRIP.
AK294714 - Homo sapiens cDNA FLJ56979 complete cds, highly similar to Rab effector MyRIP.
JD345037 - Sequence 326061 from Patent EP1572962.
AL050090 - Homo sapiens mRNA; cDNA DKFZp586F1018 (from clone DKFZp586F1018).
JD244100 - Sequence 225124 from Patent EP1572962.
JD099701 - Sequence 80725 from Patent EP1572962.
JD248171 - Sequence 229195 from Patent EP1572962.
JD052206 - Sequence 33230 from Patent EP1572962.
JD313425 - Sequence 294449 from Patent EP1572962.
JD465910 - Sequence 446934 from Patent EP1572962.
JD158182 - Sequence 139206 from Patent EP1572962.
JD445561 - Sequence 426585 from Patent EP1572962.
JD205872 - Sequence 186896 from Patent EP1572962.
JD067336 - Sequence 48360 from Patent EP1572962.
JD362597 - Sequence 343621 from Patent EP1572962.
JD311015 - Sequence 292039 from Patent EP1572962.
JD278573 - Sequence 259597 from Patent EP1572962.
JD218610 - Sequence 199634 from Patent EP1572962.
JD453983 - Sequence 435007 from Patent EP1572962.
JD351610 - Sequence 332634 from Patent EP1572962.
JD355030 - Sequence 336054 from Patent EP1572962.
JD258057 - Sequence 239081 from Patent EP1572962.
JD467645 - Sequence 448669 from Patent EP1572962.
JD074448 - Sequence 55472 from Patent EP1572962.
JD281897 - Sequence 262921 from Patent EP1572962.
JD046208 - Sequence 27232 from Patent EP1572962.
JD092195 - Sequence 73219 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC109312
UCSC ID: uc010hhu.3
RefSeq Accession: NM_015460

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: BC109312.1
exon count: 17CDS single in 3' UTR: no RNA size: 3245
ORF size: 0CDS single in intron: no Alignment % ID: 99.94
txCdsPredict score: 3593.50frame shift in genome: no % Coverage: 99.97
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.