Human Gene WWC3 (uc010nds.3)
  Description: Homo sapiens WWC family member 3 (WWC3), mRNA.
RefSeq Summary (NM_015691): This gene encodes a member of the WWC family of proteins, which also includes the WWC1 (KIBRA) gene product and the WWC2 gene product. The protein encoded by this gene includes a C2 domain, which is known to mediate homodimerization in the related WWC1 gene product. [provided by RefSeq, Sep 2011]. Sequence Note: The coding sequence starts at the 5'-most in-frame start codon based on currently available transcript data for this gene. It is unclear if the represented protein is N-terminally complete by comparison to other WWC family members.
Transcript (Including UTRs)
   Position: hg19 chrX:9,983,795-10,112,518 Size: 128,724 Total Exon Count: 24 Strand: +
Coding Region
   Position: hg19 chrX:10,084,492-10,109,541 Size: 25,050 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:9,983,795-10,112,518)mRNA (may differ from genome)Protein (756 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsGeneNetworkH-INV
HGNCHPRDLynxMGIneXtProtPubMed
TreefamUniProtKB

-  Comments and Description Text from UniProtKB
  ID: WWC3_HUMAN
DESCRIPTION: RecName: Full=Protein WWC3;
SIMILARITY: Belongs to the WWC family.
SIMILARITY: Contains 1 C2 domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.17 RPKM in Lung
Total median expression: 434.45 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -577.501568-0.368 Picture PostScript Text
3' UTR -918.182977-0.308 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008973 - C2_Ca/lipid-bd_dom_CaLB

SCOP Domains:
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)

ModBase Predicted Comparative 3D Structure on Q9ULE0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0019900 kinase binding
GO:0032947 protein complex scaffold

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0035331 negative regulation of hippo signaling
GO:0046621 negative regulation of organ growth

Cellular Component:
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  KC987947 - Homo sapiens WWC family member 3 (WWC3) mRNA, complete cds.
BC098455 - Homo sapiens WWC family member 3, mRNA (cDNA clone IMAGE:4585512), with apparent retained intron.
AK292961 - Homo sapiens cDNA FLJ75208 complete cds.
BC156328 - Synthetic construct Homo sapiens clone IMAGE:100061804, MGC:190106 WWC family member 3 (WWC3) mRNA, encodes complete protein.
BC157114 - Synthetic construct Homo sapiens clone IMAGE:100063401, MGC:190771 WWC family member 3 (WWC3) mRNA, encodes complete protein.
AB033106 - Homo sapiens mRNA for KIAA1280 protein, partial cds.
BC032447 - Homo sapiens WWC family member 3, mRNA (cDNA clone IMAGE:5109476), partial cds.
AL353937 - Homo sapiens mRNA; cDNA DKFZp761A1124 (from clone DKFZp761A1124).
AK301129 - Homo sapiens cDNA FLJ61174 complete cds, highly similar to WWC family member 3.
AK024683 - Homo sapiens cDNA: FLJ21030 fis, clone CAE07313.
AK091936 - Homo sapiens cDNA FLJ34617 fis, clone KIDNE2014325, highly similar to WWC family member 3.
JD374795 - Sequence 355819 from Patent EP1572962.
JD354770 - Sequence 335794 from Patent EP1572962.
JD383088 - Sequence 364112 from Patent EP1572962.
JD440587 - Sequence 421611 from Patent EP1572962.
JD476946 - Sequence 457970 from Patent EP1572962.
JD388614 - Sequence 369638 from Patent EP1572962.
JD547402 - Sequence 528426 from Patent EP1572962.
JD150530 - Sequence 131554 from Patent EP1572962.
JD021708 - Sequence 2732 from Patent EP1572962.
JD027946 - Sequence 8970 from Patent EP1572962.
JD482877 - Sequence 463901 from Patent EP1572962.
BC003527 - Homo sapiens WWC family member 3, mRNA (cDNA clone IMAGE:3608084), partial cds.
JD199341 - Sequence 180365 from Patent EP1572962.
JD537959 - Sequence 518983 from Patent EP1572962.
JD069158 - Sequence 50182 from Patent EP1572962.
JD536002 - Sequence 517026 from Patent EP1572962.
JD463974 - Sequence 444998 from Patent EP1572962.
JD213604 - Sequence 194628 from Patent EP1572962.
JD521208 - Sequence 502232 from Patent EP1572962.
JD255405 - Sequence 236429 from Patent EP1572962.
JD254966 - Sequence 235990 from Patent EP1572962.
JD424203 - Sequence 405227 from Patent EP1572962.
JD360383 - Sequence 341407 from Patent EP1572962.
JD123800 - Sequence 104824 from Patent EP1572962.
JD265074 - Sequence 246098 from Patent EP1572962.
JD212263 - Sequence 193287 from Patent EP1572962.
AF217518 - Homo sapiens uncharacterized bone marrow protein BM042 mRNA, complete cds.
JD302661 - Sequence 283685 from Patent EP1572962.
KJ902887 - Synthetic construct Homo sapiens clone ccsbBroadEn_12281 WWC3 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: A8KA96, BC098455, KIAA1280, Q659C1, Q9BTQ1, Q9ULE0, WWC3_HUMAN
UCSC ID: uc010nds.3
RefSeq Accession: NM_015691
Protein: Q9ULE0 (aka WWC3_HUMAN)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC098455.1
exon count: 24CDS single in 3' UTR: no RNA size: 3985
ORF size: 2271CDS single in intron: no Alignment % ID: 99.95
txCdsPredict score: 2828.00frame shift in genome: no % Coverage: 99.32
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.