Human Gene SH3D21 (uc010oia.1)
Description: Homo sapiens SH3 domain containing 21 (SH3D21), transcript variant 1, mRNA.
Transcript (Including UTRs)
Position: hg19 chr1:36,771,994-36,787,379 Size: 15,386 Total Exon Count: 16 Strand: +
Coding Region
Position: hg19 chr1:36,772,022-36,786,728 Size: 14,707 Coding Exon Count: 16
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR000108 - p67phox
IPR011511 - SH3_2
IPR001452 - SH3_domain
Pfam Domains: PF00018 - SH3 domain
PF07653 - Variant SH3 domain
PF14604 - Variant SH3 domain
SCOP Domains: 50044 - SH3-domain
ModBase Predicted Comparative 3D Structure on J3KQM5
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
AK297015 - Homo sapiens cDNA FLJ58582 complete cds.AK056459 - Homo sapiens cDNA FLJ31897 fis, clone NT2RP7004080, weakly similar to CELL SURFACE GLYCOPROTEIN 1 PRECURSOR.JD437127 - Sequence 418151 from Patent EP1572962.JD279111 - Sequence 260135 from Patent EP1572962.JD278637 - Sequence 259661 from Patent EP1572962.JD071475 - Sequence 52499 from Patent EP1572962.JD498122 - Sequence 479146 from Patent EP1572962.JD206509 - Sequence 187533 from Patent EP1572962.JD382146 - Sequence 363170 from Patent EP1572962.JD327746 - Sequence 308770 from Patent EP1572962.JD354168 - Sequence 335192 from Patent EP1572962.BC101676 - Homo sapiens chromosome 1 open reading frame 113, mRNA (cDNA clone IMAGE:8069182), partial cds.BC101678 - Homo sapiens chromosome 1 open reading frame 113, mRNA (cDNA clone IMAGE:8069184), partial cds.JD125996 - Sequence 107020 from Patent EP1572962.BC048273 - Homo sapiens chromosome 1 open reading frame 113, mRNA (cDNA clone IMAGE:4450991), partial cds.AK026591 - Homo sapiens cDNA: FLJ22938 fis, clone KAT08023.BC036763 - Homo sapiens chromosome 1 open reading frame 113, mRNA (cDNA clone IMAGE:5723875), partial cds.JD258106 - Sequence 239130 from Patent EP1572962.JD465870 - Sequence 446894 from Patent EP1572962.JD339926 - Sequence 320950 from Patent EP1572962.JD439643 - Sequence 420667 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: C1orf113, hCG_2031984, J3KQM5, J3KQM5_HUMAN, NM_001162530, NP_078952UCSC ID: uc010oia.1RefSeq Accession: NM_001162530
Protein: J3KQM5
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001162530.1
exon count:
16 CDS single in 3' UTR:
no
RNA size:
2527
ORF size:
2271 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
4499.00 frame shift in genome:
no
% Coverage:
99.68
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
yes
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
569 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.