Human Gene DNAJC9 (uc010qkg.2)
Description: Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 9 (DNAJC9), mRNA.
Transcript (Including UTRs)
Position: hg19 chr10:75,002,582-75,008,620 Size: 6,039 Total Exon Count: 5 Strand: -
Coding Region
Position: hg19 chr10:75,003,158-75,006,947 Size: 3,790 Coding Exon Count: 5
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: DNJC9_HUMAN
DESCRIPTION: RecName: Full=DnaJ homolog subfamily C member 9; AltName: Full=DnaJ protein SB73;
SIMILARITY: Contains 1 J domain.
Primer design for this transcript
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): DNAJC9
CDC HuGE Published Literature: DNAJC9
MalaCards Disease Associations
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR001623 - DnaJ_N
IPR018253 - Heat_shock_DnaJ_CS
IPR003095 - Hsp_DnaJ
Pfam Domains: PF00226 - DnaJ domain
SCOP Domains: 46565 - Chaperone J-domain
ModBase Predicted Comparative 3D Structure on Q8WXX5
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF209951 - JP 2014500723-A/17454: Polycomb-Associated Non-Coding RNAs.AK074420 - Homo sapiens cDNA FLJ23840 fis, clone KAT02642.AF327347 - Homo sapiens DnaJ protein SB73 mRNA, complete cds.AK094162 - Homo sapiens cDNA FLJ36843 fis, clone ASTRO2012552, highly similar to DnaJ homolog subfamily C member 9.JD163287 - Sequence 144311 from Patent EP1572962.JD371154 - Sequence 352178 from Patent EP1572962.JD164091 - Sequence 145115 from Patent EP1572962.JD481815 - Sequence 462839 from Patent EP1572962.JD378872 - Sequence 359896 from Patent EP1572962.JD053355 - Sequence 34379 from Patent EP1572962.JD566563 - Sequence 547587 from Patent EP1572962.BC136507 - Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 9, mRNA (cDNA clone MGC:168119 IMAGE:9020496), complete cds.LF333143 - JP 2014500723-A/140646: Polycomb-Associated Non-Coding RNAs.LF333145 - JP 2014500723-A/140648: Polycomb-Associated Non-Coding RNAs.LF333147 - JP 2014500723-A/140650: Polycomb-Associated Non-Coding RNAs.LF333149 - JP 2014500723-A/140652: Polycomb-Associated Non-Coding RNAs.LF333150 - JP 2014500723-A/140653: Polycomb-Associated Non-Coding RNAs.AK303204 - Homo sapiens cDNA FLJ58442 complete cds, highly similar to 28S ribosomal protein S16, mitochondrial precursor (S16mt).LF333152 - JP 2014500723-A/140655: Polycomb-Associated Non-Coding RNAs.AK025715 - Homo sapiens cDNA: FLJ22062 fis, clone HEP10276, highly similar to AF151890 Homo sapiens CGI-132 protein mRNA.AK098291 - Homo sapiens cDNA FLJ40972 fis, clone UTERU2012938.MA445528 - JP 2018138019-A/17454: Polycomb-Associated Non-Coding RNAs.MA568720 - JP 2018138019-A/140646: Polycomb-Associated Non-Coding RNAs.MA568722 - JP 2018138019-A/140648: Polycomb-Associated Non-Coding RNAs.MA568724 - JP 2018138019-A/140650: Polycomb-Associated Non-Coding RNAs.MA568726 - JP 2018138019-A/140652: Polycomb-Associated Non-Coding RNAs.MA568727 - JP 2018138019-A/140653: Polycomb-Associated Non-Coding RNAs.MA568729 - JP 2018138019-A/140655: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: AK094162, DNJC9_HUMAN, NM_015190, NP_056005, Q8WXX5UCSC ID: uc010qkg.2RefSeq Accession: NM_015190
Protein: Q8WXX5
(aka DNJC9_HUMAN or DJC9_HUMAN)
CCDS: CCDS7322.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
AK094162.1
exon count:
5 CDS single in 3' UTR:
no
RNA size:
3024
ORF size:
783 CDS single in intron:
no
Alignment % ID:
99.97
txCdsPredict score:
1006.50 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
1358 # strange splices:
0
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Methods, Credits, and Use Restrictions
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