Human Gene KLRAP1 (uc010shf.2)
  Description: Homo sapiens killer cell lectin-like receptor subfamily A pseudogene 1 (KLRAP1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr12:10,741,077-10,752,434 Size: 11,358 Total Exon Count: 7 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:10,741,077-10,752,434)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
EnsemblExonPrimerHGNCLynxPubMedTreefam

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.11 RPKM in Brain - Cerebellum
Total median expression: 93.93 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK310151 - Homo sapiens cDNA, FLJ17193.
AK290077 - Homo sapiens cDNA FLJ76230 complete cds, highly similar to Homo sapiens killer cell lectin-like receptor subfamily A, member 1 (KLRA1), mRNA.
BC069672 - Homo sapiens killer cell lectin-like receptor subfamily A, member 1, mRNA (cDNA clone MGC:97336 IMAGE:7262588), complete cds.
BC069697 - Homo sapiens killer cell lectin-like receptor subfamily A, member 1, mRNA (cDNA clone MGC:97345 IMAGE:7262600), complete cds.
BC069734 - Homo sapiens killer cell lectin-like receptor subfamily A, member 1, mRNA (cDNA clone MGC:97354 IMAGE:7262612), complete cds.
AF047445 - Homo sapiens Ly-49L (LY49L) mRNA, complete cds.
AK296103 - Homo sapiens cDNA FLJ59270 complete cds, highly similar to Homo sapiens killer cell lectin-like receptor subfamily A, member 1 (KLRA1), mRNA.
AK304677 - Homo sapiens cDNA FLJ50381 complete cds, highly similar to Homo sapiens killer cell lectin-like receptor subfamily A, member 1 (KLRA1), mRNA.
BC101471 - Homo sapiens killer cell lectin-like receptor subfamily A, member 1, mRNA (cDNA clone MGC:126520 IMAGE:8068977), complete cds.
BC101473 - Homo sapiens killer cell lectin-like receptor subfamily A, member 1, mRNA (cDNA clone MGC:126522 IMAGE:8068979), complete cds.
AY334570 - Homo sapiens KLRA1 (KLRA1) mRNA, complete cds; alternatively spliced.
CU686992 - Synthetic construct Homo sapiens gateway clone IMAGE:100022580 5' read KLRA1 mRNA.
HQ448470 - Synthetic construct Homo sapiens clone IMAGE:100071899; CCSB014034_01 killer cell lectin-like receptor subfamily A, member 1 (KLRA1) gene, encodes complete protein.
KJ901103 - Synthetic construct Homo sapiens clone ccsbBroadEn_10497 KLRAP1 gene, encodes complete protein.
JD095975 - Sequence 76999 from Patent EP1572962.
JD237603 - Sequence 218627 from Patent EP1572962.
JD130091 - Sequence 111115 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_028045
UCSC ID: uc010shf.2
RefSeq Accession: NR_028045

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: yes RNA accession: NR_028045.1
exon count: 7CDS single in 3' UTR: no RNA size: 2208
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 888.50frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.