Human Gene TSHR (uc010tvs.2)
  Description: Homo sapiens thyroid stimulating hormone receptor (TSHR), transcript variant 3, mRNA.
RefSeq Summary (NM_001142626): The protein encoded by this gene is a membrane protein and a major controller of thyroid cell metabolism. The encoded protein is a receptor for thyrothropin and thyrostimulin, and its activity is mediated by adenylate cyclase. Defects in this gene are a cause of several types of hyperthyroidism. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2008].
Transcript (Including UTRs)
   Position: hg19 chr14:81,421,869-81,575,294 Size: 153,426 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr14:81,422,025-81,575,025 Size: 153,001 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:81,421,869-81,575,294)mRNA (may differ from genome)Protein (274 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCLynxMalacardsMGIOMIM
PubMedTreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: G3V2A9_HUMAN
DESCRIPTION: SubName: Full=Thyrotropin receptor;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): TSHR
CDC HuGE Published Literature: TSHR
Positive Disease Associations: autoimmune thyroid disease; thyroid disease, autoimmune , congenital and subclinical hypothyroidism , congenital athyreosis , congenital primary hypothyroidism , Eye , Graves Disease , Graves' disease , Hair , hair morphology , insulin , Myocardial Infarction
Related Studies:
  1. autoimmune thyroid disease; thyroid disease, autoimmune
    Akamizu, T. et al. 2000, Association of autoimmune thyroid disease with microsatellite markers for the thyrotropin receptor gene and CTLA-4 in Japanese patients., Thyroid. 2000 Oct;10(10):851-8. [PubMed 11081251]
    These results confirm and expand on our previous study suggesting that alleles of the TSHR and CTLA-4 genes, or genes near them contribute to AITD susceptibility and set the stage for future studies of interactions between these genes and AITD.
  2. congenital and subclinical hypothyroidism
    Camilot, M. et al. 2005, Thyrotropin receptor gene mutations and TSH resistance: variable expressivity in the heterozygotes., Clinical endocrinology. 2005 Aug;63(2):146-51. [PubMed 16060907]
    A single grossly mutated allele (such as C41S or 555-561del) invariably leads to a condition of subclinical hypothyroidism, whereas in case of heterozygous carriers of mutations partially affecting the receptor function (such as P162A or L252P), a remarkable variable expressivity was detected among individuals belonging to different generations.
  3. congenital athyreosis
    Gagne N et al. 1998, Apparent congenital athyreosis contrasting with normal plasma thyroglobulin levels and associated with inactivating mutations in the thyrotropin receptor gene: are athyreosis and ectopic thyroid distinct entities?, The Journal of clinical endocrinology and metabolism. 1998 May;83(5):1771-5. [PubMed 9589691]
    We conclude that different genetic and nongenetic mechanisms for athyreosis and ectopic thyroid are likely, and that these two distinct entities are themselves heterogeneous. Our results further show that inactivating mutations in TSH-R may account for some cases of apparent congenital athyreosis and should be suspected, especially if plasma thyroglobulin levels are normal.
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: TSHR
Diseases sorted by gene-association score: hypothyroidism, congenital, nongoitrous, 1* (1670), hyperthyroidism, familial gestational* (1669), hyperthyroidism, nonautoimmune* (1650), familial hyperthyroidism due to mutations in tsh receptor* (400), hypothyroidism, congenital, due to thyroid dysgenesis or hypoplasia* (261), athyreosis* (260), visual epilepsy* (107), seizure disorder* (107), thyroid carcinoma with thyrotoxicosis* (100), hyperthyroidism (72), multinodular goiter (46), myxedema (46), hypothyroidism (44), graves' disease (35), neonatal thyrotoxicosis (32), goiter (23), exophthalmos (22), thyroiditis (19), hashimoto thyroiditis (16), thyroid cancer (16), chronic orbital inflammation (15), benign struma ovarii (15), autoimmune disease of endocrine system (14), thyroid gland disease (14), congenital hypothyroidism (12), subacute thyroiditis (12), nodular goiter (11), thyroid cancer, nonmedullary, 1 (11), thyroid cancer, nonmedullary, 2 (11), papillary carcinoma (11), endemic goiter (11), orbital plasma cell granuloma (10), graves disease 1 (10), nontoxic goiter (9), thymic hyperplasia (9), struma ovarii (8), neonatal hypothyroidism (8), orbital disease (8), follicular adenoma (6), toxic diffuse goiter (6), alpha/beta t-cell lymphopenia with gamma/delta t-cell expansion, severe cytomegalovirus infection, and autoimmunity (6), ovarian germ cell teratoma (6), thyrotoxic periodic paralysis (6), ethylmalonic encephalopathy (5), hypersensitivity reaction disease (5), hypersensitivity reaction type ii disease (4), differentiated thyroid carcinoma (3), eye disease (1), immune system disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 84.44 RPKM in Thyroid
Total median expression: 88.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -55.90156-0.358 Picture PostScript Text
3' UTR -62.00269-0.230 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002274 - TSH_rcpt

Pfam Domains:
PF13306 - Leucine rich repeats (6 copies)
PF13855 - Leucine rich repeat

SCOP Domains:
52047 - RNI-like
52058 - L domain-like
52075 - Outer arm dynein light chain 1

ModBase Predicted Comparative 3D Structure on G3V2A9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  AK303378 - Homo sapiens cDNA FLJ56543 complete cds, highly similar to Thyrotropin receptor precursor.
BC024205 - Homo sapiens thyroid stimulating hormone receptor, mRNA (cDNA clone IMAGE:3030349), complete cds.
M31774 - Human thyrotropin receptor (TSH) mRNA, complete cds.
BC108653 - Homo sapiens thyroid stimulating hormone receptor, mRNA (cDNA clone IMAGE:3860072), complete cds.
BC009237 - Homo sapiens thyroid stimulating hormone receptor, mRNA (cDNA clone IMAGE:2989823), complete cds.
M73747 - Homo sapiens thyroid stimulating hormone receptor (TSHR) mRNA, complete cds.
A34990 - H.sapiens TSH receptor.
M32215 - Human thyroid stimulatory hormone receptor (TSHR) mRNA, complete cds.
BC063613 - Homo sapiens thyroid stimulating hormone receptor, mRNA (cDNA clone IMAGE:3860379), complete cds.
AB209207 - Homo sapiens mRNA for thyroid stimulating hormone receptor variant protein.
BC120972 - Homo sapiens thyroid stimulating hormone receptor, mRNA (cDNA clone IMAGE:40115462), complete cds.
BC120973 - Homo sapiens thyroid stimulating hormone receptor, mRNA (cDNA clone IMAGE:40115463), complete cds.
BC141970 - Homo sapiens thyroid stimulating hormone receptor, mRNA (cDNA clone IMAGE:40115470), complete cds.
BC127628 - Homo sapiens thyroid stimulating hormone receptor, mRNA (cDNA clone IMAGE:40115464), complete cds.
BC127629 - Homo sapiens cDNA clone IMAGE:40115466, containing frame-shift errors.
S49816 - thyrotropin receptor-I {alternatively spliced} [human, thyroid, mRNA, 793 nt].
CU687778 - Synthetic construct Homo sapiens gateway clone IMAGE:100021590 5' read TSHR mRNA.
S45272 - thyrotropin receptor [human, thyroid tissue, mRNA Partial Mutant, 1045 nt].
AB384880 - Synthetic construct DNA, clone: pF1KB3965, Homo sapiens TSHR gene for thyrotropin receptor precursor, complete cds, without stop codon, in Flexi system.
AY429111 - Homo sapiens thyroid stimulating hormone receptor mRNA, complete cds.
BC156779 - Synthetic construct Homo sapiens clone IMAGE:100062266, MGC:190224 thyroid stimulating hormone receptor (TSHR) mRNA, encodes complete protein.
HQ448048 - Synthetic construct Homo sapiens clone IMAGE:100071427; CCSB012039_02 thyroid stimulating hormone receptor (TSHR) gene, encodes complete protein.
KJ892323 - Synthetic construct Homo sapiens clone ccsbBroadEn_01717 TSHR gene, encodes complete protein.
KJ897710 - Synthetic construct Homo sapiens clone ccsbBroadEn_07104 TSHR gene, encodes complete protein.
KR711103 - Synthetic construct Homo sapiens clone CCSBHm_00020319 TSHR (TSHR) mRNA, encodes complete protein.
KR711104 - Synthetic construct Homo sapiens clone CCSBHm_00020321 TSHR (TSHR) mRNA, encodes complete protein.
KR711105 - Synthetic construct Homo sapiens clone CCSBHm_00020323 TSHR (TSHR) mRNA, encodes complete protein.
KR711106 - Synthetic construct Homo sapiens clone CCSBHm_00020326 TSHR (TSHR) mRNA, encodes complete protein.
MB483350 - JP 2019528312-A/11: MRNA-MEDIATED IMMUNIZATION METHODS.
JD544465 - Sequence 525489 from Patent EP1572962.
AK095769 - Homo sapiens cDNA FLJ38450 fis, clone FEBRA2019457.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04080 - Neuroactive ligand-receptor interaction
hsa05320 - Autoimmune thyroid disease

-  Other Names for This Gene
  Alternate Gene Symbols: G3V2A9, G3V2A9_HUMAN, NM_001142626, NP_001136098
UCSC ID: uc010tvs.2
RefSeq Accession: NM_001142626
Protein: G3V2A9 CCDS: CCDS55935.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001142626.2
exon count: 9CDS single in 3' UTR: no RNA size: 1250
ORF size: 825CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1820.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.