Human Gene ZNF527 (uc010xtq.1)
  Description: Homo sapiens zinc finger protein 527 (ZNF527), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr19:37,862,059-37,883,802 Size: 21,744 Total Exon Count: 6 Strand: +


Page IndexSequence and LinksPrimersGenetic AssociationsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:37,862,059-37,883,802)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblEntrez GeneExonPrimerGeneNetworkH-INVHGNC
LynxPubMedTreefamBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): ZNF527
CDC HuGE Published Literature: ZNF527

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.76 RPKM in Ovary
Total median expression: 50.45 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK301135 - Homo sapiens cDNA FLJ50883 complete cds, highly similar to Zinc finger protein 527.
AK091585 - Homo sapiens cDNA FLJ34266 fis, clone FEBRA2002682, moderately similar to ZINC FINGER PROTEIN 91.
AX747074 - Sequence 599 from Patent EP1308459.
AB058732 - Homo sapiens mRNA for KIAA1829 protein, partial cds.
JD207869 - Sequence 188893 from Patent EP1572962.
BC014325 - Homo sapiens zinc finger protein 527, mRNA (cDNA clone IMAGE:3931715), complete cds.
JD314816 - Sequence 295840 from Patent EP1572962.
JD314817 - Sequence 295841 from Patent EP1572962.
JD314879 - Sequence 295903 from Patent EP1572962.
JD314877 - Sequence 295901 from Patent EP1572962.
JD119382 - Sequence 100406 from Patent EP1572962.
JD242717 - Sequence 223741 from Patent EP1572962.
JD331012 - Sequence 312036 from Patent EP1572962.
JD329813 - Sequence 310837 from Patent EP1572962.
JD341815 - Sequence 322839 from Patent EP1572962.
JD479566 - Sequence 460590 from Patent EP1572962.
JD435482 - Sequence 416506 from Patent EP1572962.
JD254822 - Sequence 235846 from Patent EP1572962.
JD265592 - Sequence 246616 from Patent EP1572962.
JD311751 - Sequence 292775 from Patent EP1572962.
JD346728 - Sequence 327752 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK301135, NM_032453
UCSC ID: uc010xtq.1
RefSeq Accession: NM_032453

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: AK301135.1
exon count: 6CDS single in 3' UTR: no RNA size: 2598
ORF size: 0CDS single in intron: no Alignment % ID: 99.88
txCdsPredict score: 3204.00frame shift in genome: no % Coverage: 99.92
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.