Human Gene KLK12 (uc010ycs.1)
  Description: Homo sapiens kallikrein-related peptidase 12 (KLK12), transcript variant 3, mRNA.
RefSeq Summary (NM_145895): Kallikreins are a subgroup of serine proteases having diverse physiological functions. Growing evidence suggests that many kallikreins are implicated in carcinogenesis and some have potential as novel cancer and other disease biomarkers. This gene is one of the fifteen kallikrein subfamily members located in a cluster on chromosome 19. Alternate splicing of this gene results in three transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
Transcript (Including UTRs)
   Position: hg19 chr19:51,532,348-51,538,118 Size: 5,771 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr19:51,532,709-51,537,877 Size: 5,169 Coding Exon Count: 4 

Page IndexSequence and LinksPrimersGenetic AssociationsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:51,532,348-51,538,118)mRNA (may differ from genome)Protein (111 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHGNCLynxMGIOMIMPubMed
TreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): KLK12
CDC HuGE Published Literature: KLK12

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 66.20 RPKM in Esophagus - Mucosa
Total median expression: 91.07 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -13.1076-0.172 Picture PostScript Text
3' UTR -128.17361-0.355 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009003 - Pept_cys/ser_Trypsin-like
IPR018114 - Peptidase_S1/S6_AS
IPR001254 - Peptidase_S1_S6

Pfam Domains:
PF00089 - Trypsin

SCOP Domains:
50494 - Trypsin-like serine proteases

ModBase Predicted Comparative 3D Structure on Q9UKR2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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-  Descriptions from all associated GenBank mRNAs
  KY697987 - Homo sapiens kallikrein-12 isoform 4 (KLK12) mRNA, complete cds.
AY358524 - Homo sapiens clone DNA65409 KLK12 (UNQ669) mRNA, complete cds.
LP896140 - Sequence 1004 from Patent EP3253886.
BX648580 - Homo sapiens mRNA; cDNA DKFZp686H1078 (from clone DKFZp686H1078).
BC035385 - Homo sapiens kallikrein-related peptidase 12, mRNA (cDNA clone MGC:42603 IMAGE:4825490), complete cds.
BC136341 - Homo sapiens kallikrein-related peptidase 12, mRNA (cDNA clone MGC:167951 IMAGE:9020328), complete cds.
BC143990 - Homo sapiens cDNA clone IMAGE:9052508.
BC143991 - Homo sapiens cDNA clone IMAGE:9052509.
BC143988 - Homo sapiens cDNA clone IMAGE:9052506.
KJ902528 - Synthetic construct Homo sapiens clone ccsbBroadEn_11922 KLK12 gene, encodes complete protein.
JD262563 - Sequence 243587 from Patent EP1572962.
JD350005 - Sequence 331029 from Patent EP1572962.
JD414123 - Sequence 395147 from Patent EP1572962.
JD486317 - Sequence 467341 from Patent EP1572962.
JD516376 - Sequence 497400 from Patent EP1572962.
JD428646 - Sequence 409670 from Patent EP1572962.
JD422956 - Sequence 403980 from Patent EP1572962.
JD049447 - Sequence 30471 from Patent EP1572962.
JD039312 - Sequence 20336 from Patent EP1572962.
JD168586 - Sequence 149610 from Patent EP1572962.
JD168585 - Sequence 149609 from Patent EP1572962.
JD203155 - Sequence 184179 from Patent EP1572962.
JD207118 - Sequence 188142 from Patent EP1572962.
JD264295 - Sequence 245319 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC143990, hCG_1641508, NM_145895, NP_665902, Q9UKR2, Q9UKR2_HUMAN
UCSC ID: uc010ycs.1
RefSeq Accession: NM_145895
Protein: Q9UKR2 CCDS: CCDS54298.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC143990.1
exon count: 5CDS single in 3' UTR: no RNA size: 735
ORF size: 336CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 964.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 250# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.