Human Gene ACTR2 (uc010yqg.2)
  Description: Homo sapiens ARP2 actin-related protein 2 homolog (yeast) (ACTR2), transcript variant 1, mRNA.
RefSeq Summary (NM_001005386): The specific function of this gene has not yet been determined; however, the protein it encodes is known to be a major constituent of the ARP2/3 complex. This complex is located at the cell surface and is essential to cell shape and motility through lamellipodial actin assembly and protrusion. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr2:65,454,829-65,498,390 Size: 43,562 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg19 chr2:65,469,195-65,495,868 Size: 26,674 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:65,454,829-65,498,390)mRNA (may differ from genome)Protein (342 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsGeneNetwork
H-INVHGNCLynxMalacardsMGIPubMed
TreefamUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: E9PF41_HUMAN
DESCRIPTION: SubName: Full=Actin-related protein 2;
SIMILARITY: Belongs to the actin family.
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ACTR2
Diseases sorted by gene-association score: wiskott-aldrich syndrome (7)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 141.38 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 1929.39 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -170.30463-0.368 Picture PostScript Text
3' UTR -640.172522-0.254 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004000 - Actin-like
IPR020902 - Actin/actin-like_CS

Pfam Domains:
PF00022 - Actin

SCOP Domains:
53067 - Actin-like ATPase domain

ModBase Predicted Comparative 3D Structure on E9PF41
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  LF384713 - JP 2014500723-A/192216: Polycomb-Associated Non-Coding RNAs.
AK295157 - Homo sapiens cDNA FLJ51656 complete cds, highly similar to Actin-like protein 2.
AK301634 - Homo sapiens cDNA FLJ51655 complete cds, highly similar to Actin-like protein 2.
BC014546 - Homo sapiens ARP2 actin-related protein 2 homolog (yeast), mRNA (cDNA clone MGC:13545 IMAGE:4247021), complete cds.
BX649080 - Homo sapiens mRNA; cDNA DKFZp779L0756 (from clone DKFZp779L0756).
AF006082 - Homo sapiens actin-related protein Arp2 (ARP2) mRNA, complete cds.
AK315205 - Homo sapiens cDNA, FLJ96195, Homo sapiens ARP2 actin-related protein 2 homolog (yeast) (ACTR2),mRNA.
JD211287 - Sequence 192311 from Patent EP1572962.
LF325065 - JP 2014500723-A/132568: Polycomb-Associated Non-Coding RNAs.
JD139463 - Sequence 120487 from Patent EP1572962.
AB462954 - Synthetic construct DNA, clone: pF1KB4662, Homo sapiens ACTR2 gene for ARP2 actin-related protein 2 homolog, without stop codon, in Flexi system.
EU832071 - Synthetic construct Homo sapiens clone HAIB:100067100; DKFZo004G0724 ARP2 actin-related protein 2 homolog (yeast) protein (ACTR2) gene, encodes complete protein.
EU831978 - Synthetic construct Homo sapiens clone HAIB:100067007; DKFZo008G0723 ARP2 actin-related protein 2 homolog (yeast) protein (ACTR2) gene, encodes complete protein.
BC036253 - Homo sapiens ARP2 actin-related protein 2 homolog (yeast), mRNA (cDNA clone MGC:43532 IMAGE:5268748), complete cds.
LF366748 - JP 2014500723-A/174251: Polycomb-Associated Non-Coding RNAs.
AK025051 - Homo sapiens cDNA: FLJ21398 fis, clone COL03610.
LF325055 - JP 2014500723-A/132558: Polycomb-Associated Non-Coding RNAs.
LF325054 - JP 2014500723-A/132557: Polycomb-Associated Non-Coding RNAs.
LF325051 - JP 2014500723-A/132554: Polycomb-Associated Non-Coding RNAs.
LF325050 - JP 2014500723-A/132553: Polycomb-Associated Non-Coding RNAs.
LF325049 - JP 2014500723-A/132552: Polycomb-Associated Non-Coding RNAs.
JD019449 - Sequence 473 from Patent EP1572962.
JD033672 - Sequence 14696 from Patent EP1572962.
JD026750 - Sequence 7774 from Patent EP1572962.
JD428859 - Sequence 409883 from Patent EP1572962.
JD429536 - Sequence 410560 from Patent EP1572962.
JD221324 - Sequence 202348 from Patent EP1572962.
JD507479 - Sequence 488503 from Patent EP1572962.
LF325047 - JP 2014500723-A/132550: Polycomb-Associated Non-Coding RNAs.
JD422850 - Sequence 403874 from Patent EP1572962.
LF325046 - JP 2014500723-A/132549: Polycomb-Associated Non-Coding RNAs.
LF325045 - JP 2014500723-A/132548: Polycomb-Associated Non-Coding RNAs.
LF325044 - JP 2014500723-A/132547: Polycomb-Associated Non-Coding RNAs.
JD358320 - Sequence 339344 from Patent EP1572962.
JD068065 - Sequence 49089 from Patent EP1572962.
LF325043 - JP 2014500723-A/132546: Polycomb-Associated Non-Coding RNAs.
LF325042 - JP 2014500723-A/132545: Polycomb-Associated Non-Coding RNAs.
AL049356 - Homo sapiens mRNA; cDNA DKFZp566E233 (from clone DKFZp566E233).
LF325041 - JP 2014500723-A/132544: Polycomb-Associated Non-Coding RNAs.
AB462501 - Homo sapiens TVAS2 mRNA, PBMC-based diagnostic gene marker for vasculitis.
LF325040 - JP 2014500723-A/132543: Polycomb-Associated Non-Coding RNAs.
LF325039 - JP 2014500723-A/132542: Polycomb-Associated Non-Coding RNAs.
MA620290 - JP 2018138019-A/192216: Polycomb-Associated Non-Coding RNAs.
MA560642 - JP 2018138019-A/132568: Polycomb-Associated Non-Coding RNAs.
MA602325 - JP 2018138019-A/174251: Polycomb-Associated Non-Coding RNAs.
MA560632 - JP 2018138019-A/132558: Polycomb-Associated Non-Coding RNAs.
MA560631 - JP 2018138019-A/132557: Polycomb-Associated Non-Coding RNAs.
MA560628 - JP 2018138019-A/132554: Polycomb-Associated Non-Coding RNAs.
MA560627 - JP 2018138019-A/132553: Polycomb-Associated Non-Coding RNAs.
MA560626 - JP 2018138019-A/132552: Polycomb-Associated Non-Coding RNAs.
MA560624 - JP 2018138019-A/132550: Polycomb-Associated Non-Coding RNAs.
MA560623 - JP 2018138019-A/132549: Polycomb-Associated Non-Coding RNAs.
MA560622 - JP 2018138019-A/132548: Polycomb-Associated Non-Coding RNAs.
MA560621 - JP 2018138019-A/132547: Polycomb-Associated Non-Coding RNAs.
MA560620 - JP 2018138019-A/132546: Polycomb-Associated Non-Coding RNAs.
MA560619 - JP 2018138019-A/132545: Polycomb-Associated Non-Coding RNAs.
MA560618 - JP 2018138019-A/132544: Polycomb-Associated Non-Coding RNAs.
MA560617 - JP 2018138019-A/132543: Polycomb-Associated Non-Coding RNAs.
MA560616 - JP 2018138019-A/132542: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AK295157, E9PF41, E9PF41_HUMAN
UCSC ID: uc010yqg.2
RefSeq Accession: NM_001005386
Protein: E9PF41

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK295157.1
exon count: 10CDS single in 3' UTR: no RNA size: 1757
ORF size: 1029CDS single in intron: no Alignment % ID: 99.72
txCdsPredict score: 2007.50frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.